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Summary Expression Phenotypes Gene Literature (0) GO Terms (3) Nucleotides (254) Proteins (44) Interactants (15) Wiki
XB-GENEPAGE-5866685

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for prpf38b - All

RefSeq mRNAs(6)
Models - Gene (24)
Models - mRNA (25)
mRNAs (10)
ESTs (153)

RefSeq mRNAs (6)

Accession Version Protein Name Length Protein Species
XM_002932148 XM_002932148.4 pre-mRNA-splicing factor 38B 3664 bp XP_002932194 X. tropicalis
XM_018261108 XM_018261108.2 pre-mRNA-splicing factor 38B isoform X2 2578 bp XP_018116597 X. laevis.S
XM_018261107 XM_018261107.2 pre-mRNA-splicing factor 38B isoform X1 3013 bp XP_018116596 X. laevis.S
XM_018258708 XM_018258708.2 pre-mRNA-splicing factor 38B isoform X1 2301 bp XP_018114197 X. laevis.L
XM_041590621 XM_041590621.1 XP_041446555.1 pre-mRNA-splicing factor 38B isoform X3 1771 bp XP_041446555 X. laevis.L
XM_041590620 XM_041590620.1 XP_041446554.1 pre-mRNA-splicing factor 38B isoform X2 2031 bp XP_041446554 X. laevis.L

Models - Gene (24)

Source Version Model Species
NCBI 10.0 XBXT10g010074 X. tropicalis
NCBI 10.1 XBXL10_1g21907 X. laevis.S
NCBI 10.1 XBXL10_1g19526 X. laevis.L
ENSEMBL 10.0 prpf38b X. tropicalis
JGI 9.1 Xelaev18025510m.g X. laevis.S
JGI 9.1 Xelaev18023474m.g X. laevis.L
Xenbase 9.1 gene29685 X. tropicalis
Xenbase 9.2 gene45879 X. laevis.S
Xenbase 9.2 gene11816 X. laevis.L
ENSEMBL 9.1 prpf38b X. tropicalis
JGI 7.1 Xetro.D01281 X. tropicalis
JGI 6.0 XeXenL6RMv10024421m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000005260 X. tropicalis
JGI 4.1 e_gw1.19.55.1 X. tropicalis
JGI 4.1 e_gw1.19.53.1 X. tropicalis
JGI 4.1 gw1.19.53.1 X. tropicalis
JGI 4.1 gw1.19.55.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_190045 X. tropicalis
JGI 4.1 estExt_Genewise1.C_190053 X. tropicalis
JGI 4.1 estExt_Genewise1.C_190055 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_190090 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_190021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_19000090 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_19000021 X. tropicalis

mRNAs based on gene models(25)

Source Version Model Species
NCBI 10.0 mRNA049817 X. tropicalis
NCBI 10.1 XBmRNA36124 X. laevis.L
NCBI 10.1 XBmRNA40686 X. laevis.S
ENSEMBL 10.0 ENSXETT00000093166 X. tropicalis
JGI 9.1 Xelaev18023474m X. laevis.L
JGI 9.1 Xelaev18025510m X. laevis.S
Xenbase 9.1 rna57050 X. tropicalis
Xenbase 9.2 rna34308 X. laevis.L
Xenbase 9.2 rna90434 X. laevis.S
ENSEMBL 9.1 ENSXETT00000093166 X. tropicalis
ENSEMBL 9.1 ENSXETT00000067947 X. tropicalis
JGI 7.1 Xetro.D01281.1 X. tropicalis
JGI 6.0 XeXenL6RMv10024421m X. laevis.S
JGI 4.1 e_gw1.19.55.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000011494 X. tropicalis
JGI 4.1 e_gw1.19.53.1 X. tropicalis
JGI 4.1 gw1.19.53.1 X. tropicalis
JGI 4.1 gw1.19.55.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_190045 X. tropicalis
JGI 4.1 estExt_Genewise1.C_190053 X. tropicalis
JGI 4.1 estExt_Genewise1.C_190055 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_190090 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_190021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_19000090 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_19000021 X. tropicalis

mRNAs from cDNA libraries (10)

Clone Accession Species Library Anatomy Stage
TNeu135p21 CU075753 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TEgg113k01 CT485705 X. tropicalis
IMAGE:7657443 BC166256 X. tropicalis NIH_XGC_tropBrn3 brain frog
XM_002932148 X. tropicalis
NM_001170508 X. tropicalis
XM_018261108 X. laevis.S
XM_018261107 X. laevis.S
XM_018258708 X. laevis.L
XM_041590621 X. laevis.L
XM_041590620 X. laevis.L

ESTs (153)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu009n10 AL637952 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st74c03 DC184989 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st75c03 DC185250 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8925257 EL670789 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8853427 EL814942 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8883418 EL838975 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8883596 EL839470 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
st112c02 DC195172 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st13l06 DC166691 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st94e18 DC189951 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st95e18 DC190183 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st29c06 DC171417 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st31h10 DC172384 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7600695 CX345430 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7547510 CX489104 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7625487 CX403452 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7633864 CX375690 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7785691 CX316667 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT445 CX359093 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT11964 CX320109 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7657443 CX829182 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7554926 CX501881 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7572312 CX435138 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542013 CX448483 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7529734 CX426673 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7522255 CX470863 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7519678 CX479554 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7520273 CX480624 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA045j19 CR416259 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA041m09 CR434052 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA076k02 CR439409 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7587298 CX313214 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas031c02 AL649867 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas045m07 AL650386 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas069o17 AL682618 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas075d11 AL776894 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas117c22 AL962013 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas088a07 AL955534 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas140k08 AL962899 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas112f11 AL968044 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas119d20 AL973225 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas091d11 AL959445 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA018h19 BX703295 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA070b11 BX717260 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas024c07 AL628903 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu011d21 AL639609 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu005e08 AL640804 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu037o12 AL657948 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas061o05 AL680193 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu104e14 AL788596 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu135p21 AL789107 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu098i12 AL790145 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu115l21 AL794949 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu128i14 AL799332 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas034p03 AL649284 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
L1G11c02 AL639011 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:6987572 CF221051 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:8853427 EL814943 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8883418 EL838976 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8883596 EL839471 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
rst74c03 DC154837 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst94e18 DC159923 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst95e18 DC160177 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
XZT445 CX359092 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst13l06 DC136616 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst29c06 DC141255 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7547510 CX489103 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7554926 CX501880 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7512035 CX740494 3' X. tropicalis NIH_XGC_tropGas5 whole organism NF stage 10 to NF stage 18
IMAGE:7512014 CX740606 3' X. tropicalis NIH_XGC_tropGas5 whole organism NF stage 10 to NF stage 18
IMAGE:7657443 CX829181 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7520273 CX480623 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7600695 CX345429 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7633864 CX375689 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7625487 CX403451 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7542013 CX448482 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7522255 CX470862 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7519678 CX479553 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas119d20 BX759452 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTbA045j19 CR416260 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA041m09 CR434053 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA076k02 CR439410 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7587298 CX313213 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7785691 CX316666 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas088a07 BX751790 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas117c22 BX753184 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu104e14 BX690715 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu098i12 BX694746 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu115l21 BX694991 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu119o18 BX701271 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTpA018h19 BX703296 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas061o05 BX748738 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas091d11 BX749291 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
xl309p21 DC126026 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl297o19 DC122431 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl269n10 DC114678 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:7981524 DR728971 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
p6g4 AU244813 5' X. laevis.S Shibata Xenopus AEM lambda-ZAP II cDNA library endomesoderm NF stage 12.5 to NF stage 13
xlk109j16ex DC038710 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5