Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (11) Nucleotides (64) Proteins (41) Interactants (1) Wiki
XB-GENEPAGE-941988

Show:     All X. tropicalis X. laevis

Nucleotide sequences for optc - All

RefSeq mRNAs(6)
Models - Gene (19)
Models - mRNA (22)
mRNAs (7)
ESTs (4)

RefSeq mRNAs (6)

Accession Version Protein Name Length Protein Species
NM_001016499 NM_001016499.2 opticin precursor 1410 bp NP_001016499 X. tropicalis
XM_012962404 XM_012962404.3 opticin isoform X1 2107 bp XP_012817858 X. tropicalis
XM_012962407 XM_012962407.3 opticin isoform X1 2093 bp XP_012817861 X. tropicalis
XM_012962412 XM_012962412.3 opticin isoform X3 1952 bp XP_012817866 X. tropicalis
XM_018091263 XM_018091263.2 opticin isoform X2 2013 bp XP_017946752 X. tropicalis
XM_018249305 XM_018249305.2 opticin 1437 bp XP_018104794 X. laevis.S

Models - Gene (19)

Source Version Model Species
NCBI 10.1 XBXL10_1g9716 X. laevis.S
NCBI 10.0 XBXT10g000006 X. tropicalis
ENSEMBL 10.0 optc X. tropicalis
Xenbase 9.2 gene1382 X. laevis.S
JGI 9.1 Xelaev18014871m.g X. laevis.S
Xenbase 9.1 gene7627 X. tropicalis
ENSEMBL 9.1 optc X. tropicalis
JGI 7.1 Xetro.A01252 X. tropicalis
JGI 6.0 XeXenL6RMv10034773m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000000442 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_41000022 X. tropicalis
JGI 4.1 e_gw1.41.13.1 X. tropicalis
JGI 4.1 e_gw1.41.394.1 X. tropicalis
JGI 4.1 e_gw1.41.48.1 X. tropicalis
JGI 4.1 gw1.41.13.1 X. tropicalis
JGI 4.1 gw1.41.394.1 X. tropicalis
JGI 4.1 gw1.41.48.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_41000006 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_41000005 X. tropicalis

mRNAs based on gene models(22)

Source Version Model Species
NCBI 10.1 XBmRNA18164 X. laevis.S
ENSEMBL 10.0 ENSXETT00000000938 X. tropicalis
NCBI 10.0 mRNA000039 X. tropicalis
ENSEMBL 10.0 ENSXETT00000060164 X. tropicalis
ENSEMBL 10.0 ENSXETT00000116697 X. tropicalis
Xenbase 9.2 rna4040 X. laevis.S
Xenbase 9.1 rna24555 X. tropicalis
JGI 9.1 Xelaev18014871m X. laevis.S
ENSEMBL 9.1 ENSXETT00000060164 X. tropicalis
ENSEMBL 9.1 ENSXETT00000000938 X. tropicalis
JGI 7.1 Xetro.A01252.1 X. tropicalis
JGI 6.0 XeXenL6RMv10034773m X. laevis.S
JGI 4.1 e_gw1.41.13.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000000938 X. tropicalis
JGI 4.1 gw1.41.13.1 X. tropicalis
JGI 4.1 gw1.41.394.1 X. tropicalis
JGI 4.1 gw1.41.48.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_41000006 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_41000022 X. tropicalis
JGI 4.1 e_gw1.41.48.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_41000005 X. tropicalis
JGI 4.1 e_gw1.41.394.1 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
TTpA008m17 CR760802 X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
NM_001016499 X. tropicalis
XM_012962404 X. tropicalis
XM_012962407 X. tropicalis
XM_012962412 X. tropicalis
XM_018091263 X. tropicalis
XM_018249305 X. laevis.S

ESTs (4)

Clone Accession 5'/3' Species Library Anatomy Stage
TTbA080e09 CR441237 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA008m17 BX706213 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTbA080e09 CR441238 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA008m17 BX706214 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40