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Summary Expression Phenotypes Gene Literature (2) GO Terms (21) Nucleotides (156) Proteins (62) Interactants (325) Wiki
XB-GENEPAGE-943657

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for optn - All

Models - Gene (28)
Models - mRNA (34)
mRNAs (12)
ESTs (36)

Models - Gene (28)

Source Version Model Species
NCBI 10.0 XBXT10g015712 X. tropicalis
NCBI 10.1 XBXL10_1g12831 X. laevis.L
NCBI 10.1 XBXL10_1g16051 X. laevis.S
ENSEMBL 10.0 optn X. tropicalis
JGI 9.1 Xelaev18017830m.g X. laevis.L
JGI 9.1 Xelaev18020929m.g X. laevis.S
Xenbase 9.1 gene2571 X. tropicalis
Xenbase 9.2 gene40900 X. laevis.L
Xenbase 9.2 gene12748 X. laevis.S
ENSEMBL 9.1 optn X. tropicalis
JGI 8.0 Xetrov14014087m.g X. tropicalis
JGI 7.1 Xetro.C02012 X. tropicalis
JGI 7.2 Xelaev16007392m.g X. laevis.L
JGI 6.0 XeXenL6RMv10009226m.g X. laevis.L
JGI 6.0 XeXenL6RMv10031260m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000009111 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_138000003 X. tropicalis
JGI 4.1 gw1.138.69.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1380007 X. tropicalis
JGI 4.1 e_gw1.138.69.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1380068 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1380003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1380009 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1380010 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1380003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_138000009 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_138000010 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_138000003 X. tropicalis

Models - mRNA (34)

Source Version Model Species
NCBI 10.0 mRNA077727 X. tropicalis
NCBI 10.1 XBmRNA24204 X. laevis.L
NCBI 10.1 XBmRNA30041 X. laevis.S
ENSEMBL 10.0 ENSXETT00000019986 X. tropicalis
ENSEMBL 10.0 ENSXETT00000093247 X. tropicalis
JGI 9.1 Xelaev18017830m X. laevis.L
JGI 9.1 Xelaev18020929m X. laevis.S
Xenbase 9.1 rna8537 X. tropicalis
Xenbase 9.2 rna83106 X. laevis.L
Xenbase 9.2 rna37038 X. laevis.S
ENSEMBL 9.1 ENSXETT00000084786 X. tropicalis
ENSEMBL 9.1 ENSXETT00000019986 X. tropicalis
ENSEMBL 9.1 ENSXETT00000093247 X. tropicalis
JGI 8.0 Xetrov14014087m X. tropicalis
JGI 7.1 Xetro.C02012.2 X. tropicalis
JGI 7.1 Xetro.C02012.3 X. tropicalis
JGI 7.1 Xetro.C02012.4 X. tropicalis
JGI 7.1 Xetro.C02012.1 X. tropicalis
JGI 7.2 Xelaev16007392m X. laevis.L
JGI 6.0 XeXenL6RMv10009226m X. laevis.L
JGI 6.0 XeXenL6RMv10031260m X. laevis.L
JGI 4.1 fgenesh1_kg.C_scaffold_138000003 X. tropicalis
ENSEMBL 4.1 ENSXETT00000019986 X. tropicalis
JGI 4.1 e_gw1.138.69.1 X. tropicalis
JGI 4.1 gw1.138.69.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1380007 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1380068 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1380003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1380009 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1380010 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1380003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_138000009 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_138000010 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_138000003 X. tropicalis

mRNAs (12)

Clone Accession Species Library Anatomy Stage
IMAGE:7568249 BC161287 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
XM_004913039 X. tropicalis
XM_004913038 X. tropicalis
XM_018092337 X. tropicalis
XM_018092336 X. tropicalis
IMAGE:8547149 BC129708 X. laevis.S
IMAGE:7205613 BC088724 X. laevis.L
NM_001097720 X. laevis.S
NM_001095432 X. laevis.L
XM_018253960 X. laevis.S
XM_018251182 X. laevis.L
XM_018251181 X. laevis.L

ESTs (36)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7711603 CX968240 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
xtbs28A16 CN087177 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:8928955 EL677545 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8921803 EL835934 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7717116 CX978250 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7718430 CX980833 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7556305 CX504103 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7568249 CX456054 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7846079 DT528691 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7579671 CX418729 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas044f24 AL654587 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7464511 CV811915 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:7711174 CX967915 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
xtbs28A16 CN087176 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:8928955 EL677544 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8921803 EL835935 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7717116 CX978249 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7718430 CX980832 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7711603 CX968239 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7846079 DT528690 3' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7579671 CX418728 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7568249 CX456053 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7556305 CX504102 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7711174 CX967914 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:8531364 EB473032 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8536974 EB476652 5' X. laevis.L NICHD_XGC_olfb brain unspecified stage
IMAGE:8641811 EB732582 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
IMAGE:8642685 EB734767 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
IMAGE:8820808 EG572059 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
PBX0022B08 AW634556 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL079a24 BJ064320 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL072a24 BJ061130 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL072a24 BJ079327 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL201m17 BJ639329 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:8641811 EB729783 3' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
IMAGE:8820808 EG578049 3' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62