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Summary Anatomy Item Literature (649) Expression Attributions Wiki
XB-ANAT-299

Papers associated with deep

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The identification of microRNAs in the whitespotted bamboo shark (Chiloscyllium plagiosum) liver by Illumina sequencing., Zhang J., Gene. September 15, 2013; 527 (1): 259-65.


Nonclassical MHC class I-dependent invariant T cells are evolutionarily conserved and prominent from early development in amphibians., Edholm ES., Proc Natl Acad Sci U S A. August 27, 2013; 110 (35): 14342-7.          


Xenopus laevis nucleotide binding protein 1 (xNubp1) is important for convergent extension movements and controls ciliogenesis via regulation of the actin cytoskeleton., Ioannou A., Dev Biol. August 15, 2013; 380 (2): 243-58.                                  


sox4 and sox11 function during Xenopus laevis eye development., Cizelsky W., PLoS One. July 1, 2013; 8 (7): e69372.              


Different thresholds of Wnt-Frizzled 7 signaling coordinate proliferation, morphogenesis and fate of endoderm progenitor cells., Zhang Z., Dev Biol. June 1, 2013; 378 (1): 1-12.                              


Xenopus cytoplasmic linker-associated protein 1 (XCLASP1) promotes axon elongation and advance of pioneer microtubules., Marx A., Mol Biol Cell. May 1, 2013; 24 (10): 1544-58.                  


Conserved structural domains in FoxD4L1, a neural forkhead box transcription factor, are required to repress or activate target genes., Klein SL., PLoS One. April 4, 2013; 8 (4): e61845.                  


Identification and characterization of novel microRNA candidates from deep sequencing., Wu Q., Clin Chim Acta. January 16, 2013; 415 239-44.


Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene., Nicetto D., PLoS Genet. January 1, 2013; 9 (1): e1003188.                                                                


Conserved N-terminal negative charges support optimally efficient N-type inactivation of Kv1 channels., Prince A., PLoS One. January 1, 2013; 8 (4): e62695.                      


Existence of G-quadruplex structures in promoter region of oncogenes confirmed by G-quadruplex DNA cross-linking strategy., Yuan L., Sci Rep. January 1, 2013; 3 1811.            


DNA ligases I and III cooperate in alternative non-homologous end-joining in vertebrates., Paul K., PLoS One. January 1, 2013; 8 (3): e59505.            


Whole-genome microRNA screening identifies let-7 and mir-18 as regulators of germ layer formation during early embryogenesis., Colas AR., Genes Dev. December 1, 2012; 26 (23): 2567-79.      


Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis., Gardner EJ., Genes Dev. November 15, 2012; 26 (22): 2550-9.


Isolation and characterization of melanopsin photoreceptors of Atlantic salmon (Salmo salar)., Sandbakken M., J Comp Neurol. November 1, 2012; 520 (16): 3727-44.


Activation of germline-specific genes is required for limb regeneration in the Mexican axolotl., Zhu W., Dev Biol. October 1, 2012; 370 (1): 42-51.                


Pressure-selective modulation of NMDA receptor subtypes may reflect 3D structural differences., Mor A., Front Cell Neurosci. September 11, 2012; 6 37.            


Gastrulation and pre-gastrulation morphogenesis, inductions, and gene expression: similarities and dissimilarities between urodelean and anuran embryos., Kaneda T., Dev Biol. September 1, 2012; 369 (1): 1-18.          


The permeability of reconstituted nuclear pores provides direct evidence for the selective phase model., Hülsmann BB., Cell. August 17, 2012; 150 (4): 738-51.          


Sizzled-tolloid interactions maintain foregut progenitors by regulating fibronectin-dependent BMP signaling., Kenny AP., Dev Cell. August 14, 2012; 23 (2): 292-304.                                


Ciliary and non-ciliary expression and function of PACRG during vertebrate development., Thumberger T., Cilia. August 1, 2012; 1 (1): 13.                        


Intracellular β-nicotinamide adenine dinucleotide inhibits the skeletal muscle ClC-1 chloride channel., Bennetts B., J Biol Chem. July 27, 2012; 287 (31): 25808-20.


Structural basis of Wnt recognition by Frizzled., Janda CY., Science. July 6, 2012; 337 (6090): 59-64.


Open-channel blockade is less effective on GluN3B than GluN3A subunit-containing NMDA receptors., McClymont DW., Eur J Pharmacol. July 5, 2012; 686 (1-3): 22-31.                  


Characterization of small RNAs in X. tropicalis gastrulae., Faunes F., Genesis. July 1, 2012; 50 (7): 572-83.


Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species., Rosenblum EB., Mol Ecol. July 1, 2012; 21 (13): 3110-20.


A CANDLE for a deeper in vivo insight., Coupé P., Med Image Anal. May 1, 2012; 16 (4): 849-64.


Cadherin-dependent differential cell adhesion in Xenopus causes cell sorting in vitro but not in the embryo., Ninomiya H., J Cell Sci. April 15, 2012; 125 (Pt 8): 1877-83.              


Cell movements of the deep layer of non-neural ectoderm underlie complete neural tube closure in Xenopus., Morita H., Development. April 1, 2012; 139 (8): 1417-26.                        


Polarity proteins are required for left-right axis orientation and twin-twin instruction., Vandenberg LN., Genesis. March 1, 2012; 50 (3): 219-34.                    


Identification of novel microRNAs in Xenopus laevis metaphase II arrested eggs., Ambady S., Genesis. March 1, 2012; 50 (3): 286-99.


Characterization of small RNAs in Xenopus tropicalis gastrulae., Faunes F., Genesis. March 1, 2012; 50 (3): 260-70.


Linking early determinants and cilia-driven leftward flow in left-right axis specification of Xenopus laevis: a theoretical approach., Schweickert A., Differentiation. February 1, 2012; 83 (2): S67-77.      


Serotonin signaling is required for Wnt-dependent GRP specification and leftward flow in Xenopus., Beyer T., Curr Biol. January 10, 2012; 22 (1): 33-9.                


Maternal xNorrin, a canonical Wnt signaling agonist and TGF-β antagonist, controls early neuroectoderm specification in Xenopus., Xu S., PLoS Biol. January 1, 2012; 10 (3): e1001286.                                    


High-resolution whole-mount in situ hybridization using Quantum Dot nanocrystals., Ioannou A., J Biomed Biotechnol. January 1, 2012; 2012 627602.        


Foxi2 is an animally localized maternal mRNA in Xenopus, and an activator of the zygotic ectoderm activator Foxi1e., Cha SW., PLoS One. January 1, 2012; 7 (7): e41782.            


Activation of endogenous FAK via expression of its amino terminal domain in Xenopus embryos., Petridou NI., PLoS One. January 1, 2012; 7 (8): e42577.            


Transcriptomics using next generation sequencing technologies., Lee-Liu D., Methods Mol Biol. January 1, 2012; 917 293-317.


Chromatin immunoprecipitation analysis of Xenopus embryos., Akkers RC., Methods Mol Biol. January 1, 2012; 917 279-92.


Following the fate of neural progenitors by homotopic/homochronic grafts in Xenopus embryos., Thuret R., Methods Mol Biol. January 1, 2012; 916 203-15.


A maternally established SoxB1/SoxF axis is a conserved feature of chordate germ layer patterning., Cattell MV., Evol Dev. January 1, 2012; 14 (1): 104-15.


Skin regeneration in adult axolotls: a blueprint for scar-free healing in vertebrates., Seifert AW., PLoS One. January 1, 2012; 7 (4): e32875.                      


Origin and segregation of cranial placodes in Xenopus laevis., Pieper M., Dev Biol. December 15, 2011; 360 (2): 257-75.                        


Prx-1 expression in Xenopus laevis scarless skin-wound healing and its resemblance to epimorphic regeneration., Yokoyama H., J Invest Dermatol. December 1, 2011; 131 (12): 2477-85.                        


Chemokine ligand Xenopus CXCLC (XCXCLC) regulates cell movements during early morphogenesis., Goto T., Dev Growth Differ. December 1, 2011; 53 (9): 971-81.            


Misexpression of testicular microRNA in sterile Xenopus hybrids points to tetrapod-specific microRNAs associated with male fertility., Madison-Villar MJ., J Mol Evol. December 1, 2011; 73 (5-6): 316-24.


Unintended consequences of existential quantifications in biomedical ontologies., Boeker M., BMC Bioinformatics. November 24, 2011; 12 456.  


Expression of DNA transposable elements during nervous system development: A discussion about its possible functions., Faunes F., Mob Genet Elements. November 1, 2011; 1 (4): 296-300.    


Identification of small-molecule inhibitors of the XendoU endoribonucleases family., Ragno R., ChemMedChem. October 4, 2011; 6 (10): 1797-805.            

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