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Summary Stage Literature (1407) Attributions Wiki
XB-STAGE-5

Papers associated with blastula stage

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Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR, van Genesen S, Li Q, Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC., EMBO J. May 3, 2021; 40 (9): e104913.                        


Lamin B receptor-mediated chromatin tethering to the nuclear envelope is detrimental to the xenopus blastula., Oda H, Kato S, Ohsumi K, Iwabuchi M., J Biochem. April 18, 2021; 169 (3): 313-326.


Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage., Castro Colabianchi AM, Tavella MB, Boyadjián López LE, Rubinstein M, Franchini LF, López SL., Biol Open. February 25, 2021; 10 (2):                 


Establishing embryonic territories in the context of Wnt signaling., Velloso I, Maia LA, Amado NG, Reis AH, He X, Abreu JG., Int J Dev Biol. January 1, 2021; 65 (4-5-6): 227-233.      


Epigenetic regulation of replication origin assembly: A role for histone H1 and chromatin remodeling factors., Falbo L, Costanzo V., Bioessays. January 1, 2021; 43 (1): e2000181.


Hes5.9 Coordinate FGF and Notch Signaling to Modulate Gastrulation via Regulating Cell Fate Specification and Cell Migration in Xenopus tropicalis., Huang X, Zhang L, Yang S, Zhang Y, Wu M, Chen P., Genes (Basel). November 18, 2020; 11 (11):                   


A comparative analysis of fibroblast growth factor receptor signalling during Xenopus development., Brunsdon H, Isaacs HV., Biol Cell. May 1, 2020; 112 (5): 127-139.                


The tumor suppressor PTPRK promotes ZNRF3 internalization and is required for Wnt inhibition in the Spemann organizer., Chang LS, Kim M, Glinka A, Reinhard C, Niehrs C., Elife. January 1, 2020; 9                                                                                               


The regulatory proteins DSCR6 and Ezh2 oppositely regulate Stat3 transcriptional activity in mesoderm patterning during Xenopus development., Loreti M, Shi DL, Carron C., J Biol Chem. January 1, 2020; 295 (9): 2724-2735.                


Chromatin accessibility and histone acetylation in the regulation of competence in early development., Esmaeili M, Blythe SA, Tobias JW, Zhang K, Yang J, Klein PS., Dev Biol. January 1, 2020; 462 (1): 20-35.


Modeling Bainbridge-Ropers Syndrome in Xenopus laevis Embryos., Lichtig H, Artamonov A, Polevoy H, Reid CD, Bielas SL, Frank D., Front Physiol. January 1, 2020; 11 75.                    


SSRP1-mediated histone H1 eviction promotes replication origin assembly and accelerated development., Falbo L, Raspelli E, Romeo F, Fiorani S, Pezzimenti F, Casagrande F, Costa I, Parazzoli D, Costanzo V., Nat Commun. January 1, 2020; 11 (1): 1345.                


A scalable pipeline for designing reconfigurable organisms., Kriegman S, Blackiston D, Levin M, Bongard J., Proc Natl Acad Sci U S A. January 1, 2020; 117 (4): 1853-1859.        


The neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and control of brain size in Xenopus embryos., Willsey HR, Xu Y, Xu Y, Everitt A, Dea J, Exner CRT, Willsey AJ, State MW, Harland RM., Development. January 1, 2020; 147 (21):                             


Polo-like kinase 1 (Plk1) is a positive regulator of DNA replication in the Xenopus in vitro system., Ciardo D, Haccard O, Narassimprakash H, Chiodelli V, Goldar A, Marheineke K., Cell Cycle. January 1, 2020; 19 (14): 1817-1832.


GSK3 Inhibits Macropinocytosis and Lysosomal Activity through the Wnt Destruction Complex Machinery., Albrecht LV, Tejeda-Muñoz N, Bui MH, Cicchetto AC, Di Biagio D, Colozza G, Schmid E, Piccolo S, Christofk HR, De Robertis EM., Cell Rep. January 1, 2020; 32 (4): 107973.                                      


Epigenetic homogeneity in histone methylation underlies sperm programming for embryonic transcription., Oikawa M, Simeone A, Hormanseder E, Teperek M, Gaggioli V, O'Doherty A, Falk E, Sporniak M, D'Santos C, Franklin VNR, Kishore K, Bradshaw CR, Keane D, Freour T, David L, Grzybowski AT, Ruthenburg AJ, Gurdon J, Jullien J., Nat Commun. January 1, 2020; 11 (1): 3491.              


TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis., Chen M, Amado N, Tan J, Reis A, Ge M, Abreu JG, He X., Elife. January 1, 2020; 9                                                                                           


The Stemness Gene Mex3A Is a Key Regulator of Neuroblast Proliferation During Neurogenesis., Naef V, De Sarlo M, Testa G, Corsinovi D, Azzarelli R, Borello U, Ori M., Front Cell Dev Biol. January 1, 2020; 8 549533.            


Dact-4 is a Xenopus laevis Spemann organizer gene related to the Dapper/Frodo antagonist of β-catenin family of proteins., Colozza G, De Robertis EM., Gene Expr Patterns. January 1, 2020; 38 119153.                        


Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals., Mulholland CB, Nishiyama A, Ryan J, Nakamura R, Yiğit M, Glück IM, Trummer C, Qin W, Bartoschek MD, Traube FR, Parsa E, Ugur E, Modic M, Acharya A, Stolz P, Ziegenhain C, Wierer M, Enard W, Carell T, Lamb DC, Takeda H, Nakanishi M, Bultmann S, Leonhardt H., Nat Commun. January 1, 2020; 11 (1): 5972.                


Cdc2-like kinase 2 (Clk2) promotes early neural development in Xenopus embryos., Virgirinia RP, Jahan N, Okada M, Takebayashi-Suzuki K, Yoshida H, Nakamura M, Akao H, Yoshimoto Y, Fatchiyah F, Ueno N, Suzuki A, Suzuki A., Dev Growth Differ. August 1, 2019; 61 (6): 365-377.                              


The Spatiotemporal Control of Zygotic Genome Activation., Gentsch GE, Owens NDL, Smith JC., iScience. June 28, 2019; 16 485-498.                          


A deficiency in SUMOylation activity disrupts multiple pathways leading to neural tube and heart defects in Xenopus embryos., Bertke MM, Dubiak KM, Cronin L, Zeng E, Huber PW., BMC Genomics. May 17, 2019; 20 (1): 386.              


Nucleotide receptor P2RY4 is required for head formation via induction and maintenance of head organizer in Xenopus laevis., Harata A, Hirakawa M, Sakuma T, Yamamoto T, Hashimoto C., Dev Growth Differ. February 1, 2019; 61 (2): 186-197.                                


Analysis of Cell Fate Commitment in Xenopus Embryos., Moody SA., Cold Spring Harb Protoc. January 1, 2019; 2019 (1):


Leukemia inhibitory factor signaling in Xenopus embryo: Insights from gain of function analysis and dominant negative mutant of the receptor., Jalvy S, Veschambre P, Fédou S, Rezvani HR, Thézé N, Thiébaud P., Dev Biol. January 1, 2019; 447 (2): 200-213.                                  


Retinoic acid signaling reduction recapitulates the effects of alcohol on embryo size., Shukrun N, Shabtai Y, Pillemer G, Fainsod A., Genesis. January 1, 2019; 57 (7-8): e23284.                


Characterization of Xenopus laevis guanine deaminase reveals new insights for its expression and function in the embryonic kidney., Slater PG, Cammarata GM, Monahan C, Bowers JT, Yan O, Lee S, Lowery LA., Dev Dyn. January 1, 2019; 248 (4): 296-305.        


Evolution of the Rho guanine nucleotide exchange factors Kalirin and Trio and their gene expression in Xenopus development., Kratzer MC, England L, Apel D, Hassel M, Borchers A., Gene Expr Patterns. January 1, 2019; 32 18-27.                              


Loss of function of Kmt2d, a gene mutated in Kabuki syndrome, affects heart development in Xenopus laevis., Schwenty-Lara J, Nürnberger A, Borchers A., Dev Dyn. January 1, 2019; 248 (6): 465-476.                  


What are the roles of retinoids, other morphogens, and Hox genes in setting up the vertebrate body axis?, Durston AJ., Genesis. January 1, 2019; 57 (7-8): e23296.            


Wolf-Hirschhorn Syndrome-Associated Genes Are Enriched in Motile Neural Crest Cells and Affect Craniofacial Development in Xenopus laevis., Mills A, Bearce E, Cella R, Kim SW, Selig M, Lee S, Lowery LA., Front Physiol. January 1, 2019; 10 431.                                          


Involvement of Myt1 kinase in the G2 phase of the first cell cycle in Xenopus laevis., Yoshitome S, Aiba Y, Yuge M, Furuno N, Watanabe M, Nakajo N., Biochem Biophys Res Commun. January 1, 2019; 515 (1): 139-144.      


Barhl2 maintains T cell factors as repressors and thereby switches off the Wnt/β-Catenin response driving Spemann organizer formation., Sena E, Rocques N, Borday C, Muhamad Amin HS, Parain K, Sitbon D, Chesneau A, Durand BC., Development. January 1, 2019; 146 (10):                                             


PTK7 proteolytic fragment proteins function during early Xenopus development., Lichtig H, Cohen Y, Bin-Nun N, Golubkov V, Frank D., Dev Biol. January 1, 2019; 453 (1): 48-55.        


Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD, Blitz IL, Coley M, Cheung J, Sudou N, Taira M, Cho KWY., Cell Rep. January 1, 2019; 27 (10): 2962-2977.e5.                          


Spatiotemporal Patterning of Zygotic Genome Activation in a Model Vertebrate Embryo., Chen H, Einstein LC, Little SC, Good MC., Dev Cell. January 1, 2019; 49 (6): 852-866.e7.                                    


Transcriptome analysis of regeneration during Xenopus laevis experimental twinning., Sosa EA, Moriyama Y, Ding Y, Tejeda-Muñoz N, Colozza G, De Robertis EM., Int J Dev Biol. January 1, 2019; 63 (6-7): 301-309.


Comparative Embryonic Spatio-Temporal Expression Profile Map of the Xenopus P2X Receptor Family., Blanchard C, Boué-Grabot E, Massé K., Front Cell Neurosci. January 1, 2019; 13 340.                    


Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals., Gentsch GE, Spruce T, Owens NDL, Smith JC., Nat Commun. January 1, 2019; 10 (1): 4269.                                        


Lef1 regulates caveolin expression and caveolin dependent endocytosis, a process necessary for Wnt5a/Ror2 signaling during Xenopus gastrulation., Puzik K, Tonnier V, Opper I, Eckert A, Zhou L, Kratzer MC, Noble FL, Nienhaus GU, Gradl D., Sci Rep. January 1, 2019; 9 (1): 15645.                          


Trpc1 as the Missing Link Between the Bmp and Ca2+ Signalling Pathways During Neural Specification in Amphibians., Néant I, Leung HC, Webb SE, Miller AL, Miller AL, Moreau M, Leclerc C., Sci Rep. January 1, 2019; 9 (1): 16049.                                    


Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach., Stepien TL, Lynch HE, Yancey SX, Dempsey L, Davidson LA., PLoS One. January 1, 2019; 14 (6): e0218021.                  


Stress-generating tissue deformations in Xenopus embryos: Long-range gradients and local cell displacements., Evstifeeva AY, Luchinskaia NN, Beloussov LV., Biosystems. November 1, 2018; 173 52-64.


Calcium Signaling in Vertebrate Development and Its Role in Disease., Paudel S, Sindelar R, Saha M., Int J Mol Sci. October 30, 2018; 19 (11):     


Developmental expression of three prmt genes in Xenopus., Wang CD, Wang CD, Wang CD, Guo XF, Wong TCB, Wang H, Qi XF, Cai DQ, Deng Y, Zhao H., Zool Res. August 20, 2018;                                           


An Early Function of Polycystin-2 for Left-Right Organizer Induction in Xenopus., Vick P, Kreis J, Schneider I, Tingler M, Getwan M, Thumberger T, Beyer T, Schweickert A, Blum M., iScience. April 27, 2018; 2 76-85.                                        


Coordinated regulation of the dorsal-ventral and anterior-posterior patterning of Xenopus embryos by the BTB/POZ zinc finger protein Zbtb14., Takebayashi-Suzuki K, Konishi H, Miyamoto T, Nagata T, Uchida M, Suzuki A, Suzuki A., Dev Growth Differ. April 1, 2018; 60 (3): 158-173.          


Anosmin-1 is essential for neural crest and cranial placodes formation in Xenopus., Bae CJ, Hong CS, Saint-Jeannet JP., Biochem Biophys Res Commun. January 1, 2018; 495 (3): 2257-2263.        

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