Publications By Yun-Bo Shi

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Cryo-EM structure of the nuclear ring from Xenopus laevis nuclear pore complex., Huang G, Zhan X, Zeng C, Zhu X, Liang K, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y., Cell Res. April 1, 2022; 32 (4): 349-358.

Thyroid Hormone Receptor α Controls the Hind Limb Metamorphosis by Regulating Cell Proliferation and Wnt Signaling Pathways in Xenopus tropicalis., Tanizaki Y, Shibata Y, Zhang H, Shi YB., Int J Mol Sci. January 22, 2022; 23 (3):

Sperm associated antigen 7 is activated by T3 during Xenopus tropicalis metamorphosis via a thyroid hormone response element within the first intron., Fu L, Crawford L, Tong A, Luu N, Tanizaki Y, Shi YB., Dev Growth Differ. January 1, 2022; 64 (1): 48-58.

Thyroid hormone receptor α controls larval intestinal epithelial cell death by regulating the CDK1 pathway., Tanizaki Y, Zhang H, Shibata Y, Shi YB., Commun Biol. January 1, 2022; 5 (1): 112.

Analysis of Thyroid Hormone Receptor α-Knockout Tadpoles Reveals That the Activation of Cell Cycle Program Is Involved in Thyroid Hormone-Induced Larval Epithelial Cell Death and Adult Intestinal Stem Cell Development During Xenopus tropicalis Metamorphosis., Tanizaki Y, Shibata Y, Zhang H, Shi YB., Thyroid. January 1, 2021; 31 (1): 128-142.

A Role of Endogenous Histone Acetyltransferase Steroid Hormone Receptor Coactivator 3 in Thyroid Hormone Signaling During Xenopus Intestinal Metamorphosis., Tanizaki Y, Bao L, Shi B, Shi YB., Thyroid. January 1, 2021; 31 (4): 692-702.

Life Without Thyroid Hormone Receptor., Shi YB., Endocrinology. January 1, 2021; 162 (4):

The development of adult intestinal stem cells: Insights from studies on thyroid hormone-dependent anuran metamorphosis., Shi YB, Shibata Y, Tanizaki Y, Fu L., Vitam Horm. January 1, 2021; 116 269-293.

Thyroid Hormone Receptor Is Essential for Larval Epithelial Apoptosis and Adult Epithelial Stem Cell Development but Not Adult Intestinal Morphogenesis during Xenopus tropicalis Metamorphosis., Shibata Y, Tanizaki Y, Zhang H, Lee H, Dasso M, Shi YB., Cells. January 1, 2021; 10 (3):

Thyroid hormone activates Xenopus MBD3 gene via an intronic TRE in vivo., Fu L, Li C, Na W, Shi YB., Front Biosci (Landmark Ed). January 1, 2020; 25 (3): 437-451.

Knocking out histone methyltransferase PRMT1 leads to stalled tadpole development and lethality in Xenopus tropicalis., Shibata Y, Okada M, Miller TC, Shi YB., Biochim Biophys Acta Gen Subj. January 1, 2020; 1864 (3): 129482.

Comprehensive RNA-Seq analysis of notochord-enriched genes induced during Xenopus tropicalis tail resorption., Nakajima K, Tanizaki Y, Luu N, Zhang H, Shi YB., Gen Comp Endocrinol. January 1, 2020; 287 113349.

Organ-Specific Requirements for Thyroid Hormone Receptor Ensure Temporal Coordination of Tissue-Specific Transformations and Completion of Xenopus Metamorphosis., Shibata Y, Wen L, Okada M, Shi YB., Thyroid. January 1, 2020; 30 (2): 300-313.

Thyroid hormone receptor beta is critical for intestinal remodeling during Xenopus tropicalis metamorphosis., Shibata Y, Tanizaki Y, Shi YB., Cell Biosci. January 1, 2020; 10 46.

Direct activation of tRNA methyltransferase-like 1 (Mettl1) gene by thyroid hormone receptor implicates a role in adult intestinal stem cell development and proliferation during Xenopus tropicalis metamorphosis., Na W, Fu L, Luu N, Shi YB., Cell Biosci. January 1, 2020; 10 60.

Thyroid hormone directly activates mitochondrial fission process 1 (Mtfp1) gene transcription during adult intestinal stem cell development and proliferation in Xenopus tropicalis., Na W, Fu L, Luu N, Shi YB., Gen Comp Endocrinol. January 1, 2020; 299 113590.

The hERG channel activator, RPR260243, enhances protective IKr current early in the refractory period reducing arrhythmogenicity in zebrafish hearts., Shi YP, Pang Z, Venkateshappa R, Gunawan M, Kemp J, Truong E, Chang C, Lin E, Shafaattalab S, Faizi S, Rayani K, Tibbits GF, Claydon VE, Claydon TW., Am J Physiol Heart Circ Physiol. January 1, 2020; 319 (2): H251-H261.

Functional Studies of Transcriptional Cofactors via Microinjection-Mediated Gene Editing in Xenopus., Shibata Y, Bao L, Fu L, Shi B, Shi YB., Methods Mol Biol. January 1, 2019; 1874 507-524.

Involvement of epigenetic modifications in thyroid hormone-dependent formation of adult intestinal stem cells during amphibian metamorphosis., Fu L, Yin J, Shi YB., Gen Comp Endocrinol. January 1, 2019; 271 91-96.

Reproductive and developmental toxicity study of caffeic acid in mice., Liu Y, Qiu S, Wang L, Zhang N, Shi Y, Zhou H, Liu X, Shao L, Liu X, Chen J, Hou M., Food Chem Toxicol. January 1, 2019; 123 106-112.

Gene Expression Program Underlying Tail Resorption During Thyroid Hormone-Dependent Metamorphosis of the Ornamented Pygmy Frog Microhyla fissipes., Wang S, Liu L, Liu J, Zhu W, Tanizaki Y, Fu L, Bao L, Shi YB, Jiang J., Front Endocrinol (Lausanne). January 1, 2019; 10 11.

A unique role of thyroid hormone receptor β in regulating notochord resorption during Xenopus metamorphosis., Nakajima K, Tazawa I, Shi YB., Gen Comp Endocrinol. January 1, 2019; 277 66-72.

Extracellular protons accelerate hERG channel deactivation by destabilizing voltage sensor relaxation., Shi YP, Thouta S, Cheng YM, Claydon TW., J Gen Physiol. January 1, 2019; 151 (2): 231-246.

EVI and MDS/EVI are required for adult intestinal stem cell formation during postembryonic vertebrate development., Okada M, Shi YB., FASEB J. January 1, 2018; 32 (1): 431-439.

MicroRNA-1294 inhibits the proliferation and enhances the chemosensitivity of glioma to temozolomide via the direct targeting of TPX2., Chen H, Liu L, Li X, Shi Y, Liu N., Am J Cancer Res. January 1, 2018; 8 (2): 291-301.

Dual function model revised by thyroid hormone receptor alpha knockout frogs., Buchholz DR, Shi YB., Gen Comp Endocrinol. January 1, 2018; 265 214-218.

Methods for Investigating the Larval Period and Metamorphosis in Xenopus., Buchholz DR, Shi YB., Cold Spring Harb Protoc. January 1, 2018; 2018 (10):

Role of Thyroid Hormone Receptor in Amphibian Development., Fu L, Wen L, Shi YB., Methods Mol Biol. January 1, 2018; 1801 247-263.

The balance of two opposing factors Mad and Myc regulates cell fate during tissue remodeling., Okada M, Shi YB., Cell Biosci. January 1, 2018; 8 51.

Sensing and Processing of DNA Interstrand Crosslinks by the Mismatch Repair Pathway., Kato N, Kawasoe Y, Williams H, Coates E, Roy U, Shi Y, Beese LS, Schärer OD, Yan H, Gottesman ME, Takahashi TS, Gautier J., Cell Rep. October 31, 2017; 21 (5): 1375-1385.

Cell Proliferation Analysis during Xenopus Metamorphosis: Using 5-Ethynyl-2-Deoxyuridine (EdU) to Stain Proliferating Intestinal Cells., Okada M, Shi YB., Cold Spring Harb Protoc. September 1, 2017; 2017 (9): pdb.prot097717.

The Sox transcriptional factors: Functions during intestinal development in vertebrates., Fu L, Shi YB., Semin Cell Dev Biol. January 1, 2017; 63 58-67.

Studying nuclear functions of aminoacyl tRNA synthetases., Shi Y, Wei N, Yang XL., Methods. January 1, 2017; 113 105-110.

Thyroid Hormone-Induced Activation of Notch Signaling is Required for Adult Intestinal Stem Cell Development During Xenopus Laevis Metamorphosis., Hasebe T, Fujimoto K, Kajita M, Fu L, Shi YB, Ishizuya-Oka A., Stem Cells. January 1, 2017; 35 (4): 1028-1039.

Thyroid Hormone Receptor α Controls Developmental Timing and Regulates the Rate and Coordination of Tissue-Specific Metamorphosis in Xenopus tropicalis., Wen L, Shibata Y, Su D, Fu L, Luu N, Shi YB., Endocrinology. January 1, 2017; 158 (6): 1985-1998.

Direct Regulation of Histidine Ammonia-Lyase 2 Gene by Thyroid Hormone in the Developing Adult Intestinal Stem Cells., Luu N, Fu L, Fujimoto K, Shi YB., Endocrinology. January 1, 2017; 158 (4): 1022-1033.

A balance of Mad and Myc expression dictates larval cell apoptosis and adult stem cell development during Xenopus intestinal metamorphosis., Okada M, Miller TC, Wen L, Shi YB., Cell Death Dis. January 1, 2017; 8 (5): e2787.

Genome-wide identification of thyroid hormone receptor targets in the remodeling intestine during Xenopus tropicalis metamorphosis., Fu L, Das B, Matsuura K, Fujimoto K, Heimeier RA, Shi YB., Sci Rep. January 1, 2017; 7 (1): 6414.

Histone methyltransferase Dot1L is a coactivator for thyroid hormone receptor during Xenopus development., Wen L, Fu L, Shi YB., FASEB J. January 1, 2017; 31 (11): 4821-4831.

Regulation of growth rate and developmental timing by Xenopus thyroid hormone receptor α., Wen L, Shi YB., Dev Growth Differ. January 1, 2016; 58 (1): 106-15.

Thyroid hormone regulation of adult intestinal stem cells: Implications on intestinal development and homeostasis., Sun G, Roediger J, Shi YB., Rev Endocr Metab Disord. January 1, 2016; 17 (4): 559-569.

A simple and efficient method to visualize and quantify the efficiency of chromosomal mutations from genome editing., Fu L, Wen L, Luu N, Shi YB., Sci Rep. January 1, 2016; 6 35488.

Direct Activation of Amidohydrolase Domain-Containing 1 Gene by Thyroid Hormone Implicates a Role in the Formation of Adult Intestinal Stem Cells During Xenopus Metamorphosis., Okada M, Miller TC, Fu L, Shi YB., Endocrinology. September 1, 2015; 156 (9): 3381-93.

Histone methyltransferase Dot1L plays a role in postembryonic development in Xenopus tropicalis., Wen L, Fu L, Guo X, Chen Y, Shi YB., FASEB J. February 1, 2015; 29 (2): 385-93.

Unliganded thyroid hormone receptor α controls developmental timing in Xenopus tropicalis., Wen L, Shi YB., Endocrinology. February 1, 2015; 156 (2): 721-34.

A requirement for hedgehog signaling in thyroid hormone-induced postembryonic intestinal remodeling., Wen L, Hasebe T, Miller TC, Ishizuya-Oka A, Shi YB., Cell Biosci. January 1, 2015; 5 13.

Targeted gene disruption in Xenopus laevis using CRISPR/Cas9., Wang F, Shi Z, Cui Y, Guo X, Shi YB, Chen Y., Cell Biosci. January 1, 2015; 5 15.

Molecular and cytological analyses reveal distinct transformations of intestinal epithelial cells during Xenopus metamorphosis., Okada M, Wen L, Miller TC, Su D, Shi YB., Cell Biosci. January 1, 2015; 5 74.

Activation of Sox3 gene by thyroid hormone in the developing adult intestinal stem cell during Xenopus metamorphosis., Sun G, Fu L, Wen L, Shi YB., Endocrinology. December 1, 2014; 155 (12): 5024-32.

TPX2 overexpression in medullary thyroid carcinoma mediates TT cell proliferation., Yang X, Liu G, Xiao H, Yu F, Xiang X, Lu Y, Li W, Liu X, Li S, Shi Y., Pathol Oncol Res. July 1, 2014; 20 (3): 641-8.

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