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Summary Stage Literature (1905) Attributions Wiki
XB-STAGE-6

Papers associated with cleavage stage

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Highly conserved and extremely evolvable: BMP signalling in secondary axis patterning of Cnidaria and Bilateria., Mörsdorf D, Knabl P, Genikhovich G., Dev Genes Evol. March 13, 2024;           

Noncanonical function of folate through folate receptor 1 during neural tube formation., Balashova OA, Panoutsopoulos AA, Visina O, Selhub J, Knoepfler PS, Borodinsky LN., Nat Commun. February 22, 2024; 15 (1): 1642.                                

The early dorsal signal in vertebrate embryos requires endolysosomal membrane trafficking., Azbazdar Y, De Robertis EM., Bioessays. January 1, 2024; 46 (1): e2300179.                            

Germ plasm dynamics during oogenesis and early embryonic development in Xenopus and zebrafish., Divyanshi, Yang J., Mol Reprod Dev. December 21, 2023;         

Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus., Nguyen TA, Heng JWJ, Ng YT, Sun R, Fisher S, Oguz G, Kaewsapsak P, Xue S, Reversade B, Ramasamy A, Eisenberg E, Tan MH., BMC Biol. November 9, 2023; 21 (1): 251.                                                                                                                      

Phenotype-genotype relationships in Xenopus sox9 crispants provide insights into campomelic dysplasia and vertebrate jaw evolution., Hossain N, Igawa T, Suzuki M, Tazawa I, Nakao Y, Hayashi T, Suzuki N, Ogino H., Dev Growth Differ. October 1, 2023; 65 (8): 481-497.                  

SMOC-1 interacts with both BMP and glypican to regulate BMP signaling in C. elegans., DeGroot MS, Williams B, Chang TY, Maas Gamboa ML, Larus IM, Hong G, Fromme JC, Liu J., PLoS Biol. August 1, 2023; 21 (8): e3002272.                        

The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates., Sato Y, Narasaki I, Kunimoto T, Moriyama Y, Hashimoto C., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.                

Role of the proline-rich disordered domain of DROSHA in intronic microRNA processing., Son S, Kim B, Yang J, Kim VN., Genes Dev. May 1, 2023; 37 (9-10): 383-397.

Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus., Zhou CY, Dekker B, Liu Z, Cabrera H, Ryan J, Dekker J, Heald R., Elife. April 25, 2023; 12                                                 

Dodecaploid Xenopus longipes provides insight into the emergence of size scaling relationships during development., Miller KE, Cadart C, Heald R., Curr Biol. April 10, 2023; 33 (7): 1327-1336.e4.                

BDNF signaling in correlation-dependent structural plasticity in the developing visual system., Kutsarova E, Schohl A, Munz M, Wang A, Zhang YY, Bilash OM, Ruthazer ES., PLoS Biol. April 1, 2023; 21 (4): e3002070.          

Dorsal lip maturation and initial archenteron extension depend on Wnt11 family ligands., Van Itallie ES, Field CM, Mitchison TJ, Kirschner MW., Dev Biol. January 1, 2023; 493 67-79.                                                      

Tissue-specific expression of carbohydrate sulfotransferases drives keratan sulfate biosynthesis in the notochord and otic vesicles of Xenopus embryos., Yasuoka Y., Front Cell Dev Biol. January 1, 2023; 11 957805.                                          

Zmym4 is required for early cranial gene expression and craniofacial cartilage formation., Jourdeuil K, Neilson KM, Cousin H, Tavares ALP, Majumdar HD, Alfandari D, Alfandari D, Moody SA., Front Cell Dev Biol. January 1, 2023; 11 1274788.          

The conserved centrosomin motif, γTuNA, forms a dimer that directly activates microtubule nucleation by the γ-tubulin ring complex (γTuRC)., Rale MJ, Romer B, Mahon BP, Travis SM, Petry S., Elife. December 14, 2022; 11                               

Three-dimensional chiral morphodynamics of chemomechanical active shells., Yin S, Li B, Feng XQ., Proc Natl Acad Sci U S A. December 6, 2022; 119 (49): e2206159119.                      

Hnf1b renal expression directed by a distal enhancer responsive to Pax8., Goea L, Buisson I, Bello V, Eschstruth A, Paces-Fessy M, Le Bouffant R, Chesneau A, Cereghini S, Riou JF, Umbhauer M., Sci Rep. November 19, 2022; 12 (1): 19921.            

POLθ prevents MRE11-NBS1-CtIP-dependent fork breakage in the absence of BRCA2/RAD51 by filling lagging-strand gaps., Mann A, Ramirez-Otero MA, De Antoni A, Hanthi YW, Sannino V, Baldi G, Falbo L, Schrempf A, Bernardo S, Loizou J, Costanzo V., Mol Cell. November 17, 2022; 82 (22): 4218-4231.e8.                              

Transcription suppression is mediated by the HDAC1-Sin3 complex in Xenopus nucleoplasmic extract., Quaas CE, Lin B, Long DT., J Biol Chem. November 1, 2022; 298 (11): 102578.                    

Multiciliated cells use filopodia to probe tissue mechanics during epithelial integration in vivo., Ventura G, Amiri A, Thiagarajan R, Tolonen M, Doostmohammadi A, Sedzinski J., Nat Commun. October 28, 2022; 13 (1): 6423.                                                

INTS13 variants causing a recessive developmental ciliopathy disrupt assembly of the Integrator complex., Mascibroda LG, Shboul M, Elrod ND, Colleaux L, Hamamy H, Huang KL, Peart N, Singh MK, Lee H, Merriman B, Jodoin JN, Sitaram P, Lee LA, Fathalla R, Al-Rawashdeh B, Ababneh O, El-Khateeb M, Escande-Beillard N, Nelson SF, Wu Y, Tong L, Kenney LJ, Roy S, Russell WK, Amiel J, Reversade B, Wagner EJ., Nat Commun. October 13, 2022; 13 (1): 6054.                    

Nascent transcriptome reveals orchestration of zygotic genome activation in early embryogenesis., Chen H, Good MC., Curr Biol. October 10, 2022; 32 (19): 4314-4324.e7.                        

Differential nuclear import sets the timing of protein access to the embryonic genome., Nguyen T, Costa EJ, Deibert T, Reyes J, Keber FC, Tomschik M, Stadlmeier M, Gupta M, Kumar CK, Cruz ER, Amodeo A, Gatlin JC, Wühr M., Nat Commun. October 6, 2022; 13 (1): 5887.                                  

Mannan-binding lectin serine protease-2 (MASP-2) in human kidney and its relevance for proteolytic activation of the epithelial sodium channel., Zachar R, Thiel S, Hansen S, Henriksen ML, Skjoedt MO, Skjodt K, Hamzaei Z, Madsen K, Lund L, Hummler E, Svenningsen P, Jensen BL., Sci Rep. September 24, 2022; 12 (1): 15955.  

PEX5 translocation into and out of peroxisomes drives matrix protein import., Skowyra ML, Rapoport TA., Mol Cell. September 1, 2022; 82 (17): 3209-3225.e7.                              

Maternal Wnt11b regulates cortical rotation during Xenopus axis formation: analysis of maternal-effect wnt11b mutants., Houston DW, Elliott KL, Coppenrath K, Wlizla M, Horb ME., Development. September 1, 2022; 149 (17):                                   

The germ plasm is anchored at the cleavage furrows through interaction with tight junctions in the early zebrafish embryo., Rostam N, Goloborodko A, Riemer S, Hertel A, Riedel D, Vorbrüggen G, Dosch R., Development. August 1, 2022; 149 (15):   

A non-transcriptional function of Yap regulates the DNA replication program in Xenopus laevis., Meléndez García R, Haccard O, Chesneau A, Narassimprakash H, Roger J, Perron M, Marheineke K, Bronchain O., Elife. July 15, 2022; 11                             

Normal Table of Xenopus development: a new graphical resource., Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM., Development. July 15, 2022; 149 (14):                         

Cell cycle and developmental control of cortical excitability in Xenopus laevis., Swider ZT, Michaud A, Leda M, Landino J, Goryachev AB, Bement WM., Mol Biol Cell. July 1, 2022; 33 (8): ar73.            

Transmembrane serine protease 2 (TMPRSS2) proteolytically activates the epithelial sodium channel (ENaC) by cleaving the channel's γ-subunit., Sure F, Bertog M, Afonso S, Diakov A, Rinke R, Madej MG, Wittmann S, Gramberg T, Korbmacher C, Ilyaskin AV., J Biol Chem. June 1, 2022; 298 (6): 102004.                                        

Whole-genome sequencing identifies I-SceI-mediated transgene integration sites in Xenopus tropicalis snai2:eGFP line., Wang J, Lu C, Wei S., G3 (Bethesda). May 6, 2022; 12 (5):               

Developmental mRNA m5C landscape and regulatory innovations of massive m5C modification of maternal mRNAs in animals., Liu J, Huang T, Chen W, Ding C, Zhao T, Zhao X, Cai B, Zhang Y, Li S, Zhang L, Xue M, He X, Ge W, Zhou C, Xu Y, Xu Y, Zhang R., Nat Commun. May 5, 2022; 13 (1): 2484.          

Structural Mechanics of the Alpha-2-Macroglobulin Transformation., Arimura Y, Funabiki H., J Mol Biol. March 15, 2022; 434 (5): 167413.

Extended cleavage specificity of a Chinese alligator granzyme B homologue, a strict Glu-ase in contrast to the mammalian Asp-ases., Ryu J, Fu Z, Akula S, Olsson AK, Hellman L., Dev Comp Immunol. March 1, 2022; 128 104324.            

Proteolytic activation of the epithelial sodium channel (ENaC) by factor VII activating protease (FSAP) and its relevance for sodium retention in nephrotic mice., Artunc F, Bohnert BN, Schneider JC, Staudner T, Sure F, Ilyaskin AV, Wörn M, Essigke D, Janessa A, Nielsen NV, Birkenfeld AL, Etscheid M, Haerteis S, Korbmacher C, Kanse SM., Pflugers Arch. February 1, 2022; 474 (2): 217-229.

Yolk platelets impede nuclear expansion in Xenopus embryos., Shimogama S, Iwao Y, Hara Y., Dev Biol. February 1, 2022; 482 101-113.                    

Systematic mapping of rRNA 2'-O methylation during frog development and involvement of the methyltransferase Fibrillarin in eye and craniofacial development in Xenopus laevis., Delhermite J, Tafforeau L, Sharma S, Marchand V, Wacheul L, Lattuca R, Desiderio S, Motorin Y, Bellefroid E, Lafontaine DLJ., PLoS Genet. January 18, 2022; 18 (1): e1010012.                                                              

Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE, Nesterenko AM, Korotkova DD, Parshina EA, Martynova NY, Zaraisky AG., Dev Cell. January 10, 2022; 57 (1): 95-111.e12.                                

Activation by cleavage of the epithelial Na+ channel α and γ subunits independently coevolved with the vertebrate terrestrial migration., Wang XP, Balchak DM, Gentilcore C, Clark NL, Kashlan OB., Elife. January 5, 2022; 11         

Comparison of RNA localization during oogenesis within Acipenser ruthenus and Xenopus laevis., Iegorova V, Naraine R, Psenicka M, Zelazowska M, Sindelka R., Front Cell Dev Biol. January 1, 2022; 10 982732.                

Abnormal left-right organizer and laterality defects in Xenopus embryos after formin inhibitor SMIFH2 treatment., Petri N, Nordbrink R, Tsikolia N, Kremnyov S., PLoS One. January 1, 2022; 17 (11): e0275164.        

Optogenetic relaxation of actomyosin contractility uncovers mechanistic roles of cortical tension during cytokinesis., Yamamoto K, Miura H, Ishida M, Mii Y, Kinoshita N, Takada S, Ueno N, Sawai S, Kondo Y, Aoki K., Nat Commun. December 8, 2021; 12 (1): 7145.

CRISPR-SID: Identifying EZH2 as a druggable target for desmoid tumors via in vivo dependency mapping., Naert T, Tulkens D, Van Nieuwenhuysen T, Przybyl J, Demuynck S, van de Rijn M, Al-Jazrawe M, Alman BA, Coucke PJ, De Leeneer K, Vanhove C, Savvides SN, Creytens D, Vleminckx K, Vleminckx K., Proc Natl Acad Sci U S A. November 23, 2021; 118 (47):                             

Apurinic/Apyrimidinic Endonuclease 2 (APE2): An ancillary enzyme for contextual base excision repair mechanisms to preserve genome stability., Chaudhari S, Ware AP, Jayaram P, Gorthi SP, El-Khamisy SF, Satyamoorthy K., Biochimie. November 1, 2021; 190 70-90.

The DNA-to-cytoplasm ratio broadly activates zygotic gene expression in Xenopus., Jukam D, Kapoor RR, Straight AF, Skotheim JM., Curr Biol. October 11, 2021; 31 (19): 4269-4281.e8.                          

Xenopus chip for single-egg trapping, in vitro fertilization, development, and tadpole escape., Nam SW, Chae JP, Kwon YH, Son MY, Bae JS, Park MJ., Biochem Biophys Res Commun. September 10, 2021; 569 29-34.

Auto-inhibitory intramolecular S5/S6 interaction in the TRPV6 channel regulates breast cancer cell migration and invasion., Cai R, Wang L, Liu X, Michalak M, Tang J, Peng JB, Chen XZ., Commun Biol. August 19, 2021; 4 (1): 990.              

Evaluating the Arrhenius equation for developmental processes., Crapse J, Pappireddi N, Gupta M, Shvartsman SY, Wieschaus E, Wühr M., Mol Syst Biol. August 1, 2021; 17 (8): e9895.                  

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