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Summary Stage Literature (2148) Attributions Wiki
XB-STAGE-7

Papers associated with gastrula stage

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Eph/ephrin signaling controls cell contacts and formation of a structurally asymmetrical tissue boundary in the Xenopus gastrula., Barua D, Winklbauer R., Dev Biol. July 19, 2022; 490 73-85.


Normal Table of Xenopus development: a new graphical resource., Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM., Development. July 15, 2022; 149 (14):                         


Stiffness estimation of transversely anisotropic materials using a novel indentation tester with a rectangular hole., Tamura A, Saiki M, Hongu JI, Matsumoto T., Comput Methods Biomech Biomed Engin. July 14, 2022; 1-12.


Comparative Metabolomics of Small Molecules Specifically Expressed in the Dorsal or Ventral Marginal Zones in Vertebrate Gastrula., Suzuki Y, Hayasaka R, Hasebe M, Ikeda S, Soga T, Tomita M, Hirayama A, Kuroda H., Metabolites. June 20, 2022; 12 (6):


Rapalog-induced cell adhesion molecule inhibits mesoderm migration in Xenopus embryos by increasing frequency of adhesion to the ectoderm., Usami C, Inomata H., Genes Cells. June 1, 2022; 27 (6): 436-450.            


ccr7 affects both morphogenesis and differentiation during early Xenopus embryogenesis., Goto T, Michiue T, Shibuya H., Dev Growth Differ. June 1, 2022; 64 (5): 254-260.        


The Cytoskeletal Protein Zyxin Inhibits Retinoic Acid Signaling by Destabilizing the Maternal mRNA of the RXRγ Nuclear Receptor., Parshina EA, Orlov EE, Zaraisky AG, Martynova NY., Int J Mol Sci. May 17, 2022; 23 (10):                 


Microsurgical Methods to Make the Keller Sandwich Explant and the Dorsal Isolate., Davidson LA., Cold Spring Harb Protoc. May 16, 2022;


Microsurgical Methods to Isolate and Culture the Early Gastrula Dorsal Marginal Zone., Davidson LA., Cold Spring Harb Protoc. May 16, 2022;


Characterization of convergent thickening, a major convergence force producing morphogenic movement in amphibians., Shook DR, Wen JWH, Rolo A, O'Hanlon M, Francica B, Dobbins D, Skoglund P, DeSimone DW, Winklbauer R, Keller RE., Elife. April 11, 2022; 11                                     


Yolk platelets impede nuclear expansion in Xenopus embryos., Shimogama S, Iwao Y, Hara Y., Dev Biol. January 1, 2022; 482 101-113.                    


Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE, Nesterenko AM, Korotkova DD, Parshina EA, Martynova NY, Zaraisky AG., Dev Cell. January 1, 2022; 57 (1): 95-111.e12.


Xbp1 and Brachyury establish an evolutionarily conserved subcircuit of the notochord gene regulatory network., Wu Y, Devotta A, José-Edwards DS, Kugler JE, Negrón-Piñeiro LJ, Braslavskaya K, Addy J, Saint-Jeannet JP, Di Gregorio A., Elife. January 1, 2022; 11                             


ARVCF catenin controls force production during vertebrate convergent extension., Huebner RJ, Weng S, Lee C, Lee C, Sarıkaya S, Papoulas O, Cox RM, Marcotte EM, Wallingford JB., Dev Cell. January 1, 2022; 57 (9): 1119-1131.e5.                      


Lysosomes are required for early dorsal signaling in the Xenopus embryo., Tejeda-Muñoz N, De Robertis EM., Proc Natl Acad Sci U S A. January 1, 2022; 119 (17): e2201008119.                          


Evo-Devo of Urbilateria and its larval forms., De Robertis EM, Tejeda-Muñoz N., Dev Biol. January 1, 2022; 487 10-20.        


Reduced Retinoic Acid Signaling During Gastrulation Induces Developmental Microcephaly., Gur M, Bendelac-Kapon L, Shabtai Y, Pillemer G, Fainsod A., Front Cell Dev Biol. January 1, 2022; 10 844619.                        


FGF/MAPK/Ets signaling in Xenopus ectoderm contributes to neural induction and patterning in an autonomous and paracrine manner, respectively., Hongo I, Okamoto H., Cells Dev. January 1, 2022; 170 203769.


Retinoic Acid is Required for Normal Morphogenetic Movements During Gastrulation., Gur M, Edri T, Moody SA, Fainsod A., Front Cell Dev Biol. January 1, 2022; 10 857230.                  


Xenopus Dusp6 modulates FGF signaling to precisely pattern pre-placodal ectoderm., Tsukano K, Yamamoto T, Watanabe T, Michiue T., Dev Biol. January 1, 2022; 488 81-90.                          


Predictive assays for craniofacial malformations: evaluation in Xenopus laevis embryos exposed to triadimefon., Battistoni M, Metruccio F, Di Renzo F, Bacchetta R, Menegola E., Arch Toxicol. January 1, 2022; 96 (10): 2815-2824.          


dmrt2 and myf5 Link Early Somitogenesis to Left-Right Axis Determination in Xenopus laevis., Tingler M, Brugger A, Feistel K, Schweickert A., Front Cell Dev Biol. January 1, 2022; 10 858272.                  


Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos., Umair Z, Kumar V, Goutam RS, Kumar S, Kumar S, Lee U, Kim J., Mol Cells. October 31, 2021; 44 (10): 723-735.          


Preparation of three-notochord explants for imaging analysis of the cell movements of convergent extension during early Xenopus morphogenesis., Goto T, Keller R., Dev Growth Differ. October 1, 2021; 63 (8): 429-438.            


Pinhead antagonizes Admp to promote notochord formation., Itoh K, Ossipova O, Sokol SY., iScience. June 25, 2021; 24 (6): 102520.                            


Purified Bighead protein efficiently promotes head development in the South African clawed frog, Xenopus laevis., Colozza G., MicroPubl Biol. January 5, 2021; 2021   


Establishing embryonic territories in the context of Wnt signaling., Velloso I, Maia LA, Amado NG, Reis AH, He X, Abreu JG., Int J Dev Biol. January 1, 2021; 65 (4-5-6): 227-233.      


Ectoderm to mesoderm transition by down-regulation of actomyosin contractility., Kashkooli L, Rozema D, Espejo-Ramirez L, Lasko P, Fagotto F., PLoS Biol. January 1, 2021; 19 (1): e3001060.                                            


Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR, van Genesen S, Li Q, Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC., EMBO J. January 1, 2021; 40 (9): e104913.                        


Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage., Castro Colabianchi AM, Tavella MB, Boyadjián López LE, Rubinstein M, Franchini LF, López SL., Biol Open. January 1, 2021; 10 (2):                 


Capillarity and active cell movement at mesendoderm translocation in the Xenopus gastrula., Nagel M, Barua D, Damm EW, Kashef J, Hofmann R, Ershov A, Cecilia A, Moosmann J, Baumbach T, Winklbauer R., Development. January 1, 2021; 148 (18):                                   


RNA demethylation by FTO stabilizes the FOXJ1 mRNA for proper motile ciliogenesis., Kim H, Lee YS, Kim SM, Jang S, Choi H, Lee JW, Kim TD, Kim VN., Dev Cell. January 1, 2021; 56 (8): 1118-1130.e6.                                  


Furry is required for cell movements during gastrulation and functionally interacts with NDR1., Cervino AS, Moretti B, Stuckenholz C, Grecco HE, Davidson LA, Davidson LA, Cirio MC., Sci Rep. January 1, 2021; 11 (1): 6607.                                  


Diversity and robustness of bone morphogenetic protein pattern formation., Madamanchi A, Mullins MC, Umulis DM., Development. January 1, 2021; 148 (7):           


Quantitative analyses reveal extracellular dynamics of Wnt ligands in Xenopus embryos., Mii Y, Nakazato K, Pack CG, Ikeda T, Sako Y, Mochizuki A, Taira M, Takada S., Elife. January 1, 2021; 10                     


Smad2 and Smad3 differentially modulate chordin transcription via direct binding on the distal elements in gastrula Xenopus embryos., Kumar V, Umair Z, Kumar S, Kumar S, Lee U, Kim J., Biochem Biophys Res Commun. January 1, 2021; 559 168-175.          


The cytokine FAM3B/PANDER is an FGFR ligand that promotes posterior development in Xenopus., Zhang F, Zhu X, Wang P, He Q, Huang H, Zheng T, Li Y, Jia H, Xu L, Zhao H, Colozza G, Tao Q, De Robertis EM, Ding Y., Proc Natl Acad Sci U S A. January 1, 2021; 118 (20):           


Kindlin2 regulates neural crest specification via integrin-independent regulation of the FGF signaling pathway., Wang H, Wang C, Wang C, Wang C, Long Q, Zhang Y, Wang M, Liu J, Qi X, Cai D, Lu G, Sun J, Yao YG, Chan WY, Chan WY, Deng Y, Zhao H., Development. January 1, 2021; 148 (10):                                           


LIM homeodomain proteins and associated partners: Then and now., Yasuoka Y, Taira M., Curr Top Dev Biol. January 1, 2021; 145 113-166.


Rab7 is required for mesoderm patterning and gastrulation in Xenopus., Kreis J, Wielath FM, Vick P., Biol Open. January 1, 2021; 10 (7):                               


Generation of anisotropic strain dysregulates wild-type cell division at the interface between host and oncogenic tissue., Moruzzi M, Nestor-Bergmann A, Goddard GK, Tarannum N, Brennan K, Woolner S., Curr Biol. January 1, 2021; 31 (15): 3409-3418.e6.                  


Altering metabolite distribution at Xenopus cleavage stages affects left-right gene expression asymmetries., Onjiko RM, Nemes P, Moody SA., Genesis. January 1, 2021; 59 (5-6): e23418.          


Xenopus chip for single-egg trapping, in vitro fertilization, development, and tadpole escape., Nam SW, Chae JP, Kwon YH, Son MY, Bae JS, Park MJ., Biochem Biophys Res Commun. January 1, 2021; 569 29-34.


Temporal transcriptomic profiling reveals dynamic changes in gene expression of Xenopus animal cap upon activin treatment., Satou-Kobayashi Y, Kim JD, Fukamizu A, Asashima M., Sci Rep. January 1, 2021; 11 (1): 14537.          


A convergent molecular network underlying autism and congenital heart disease., Rosenthal SB, Willsey HR, Xu Y, Xu Y, Mei Y, Dea J, Wang S, Curtis C, Sempou E, Khokha MK, Chi NC, Willsey AJ, Fisch KM, Ideker T., Cell Syst. January 1, 2021; 12 (11): 1094-1107.e6.            


Function of chromatin modifier Hmgn1 during neural crest and craniofacial development., Ihewulezi C, Saint-Jeannet JP., Genesis. January 1, 2021; 59 (10): e23447.              


Tril dampens Nodal signaling through Pellino2- and Traf6-mediated activation of Nedd4l., Kim HS, Green YS, Xie Y, Christian JL., Proc Natl Acad Sci U S A. January 1, 2021; 118 (36):                       


A systemic cell cycle block impacts stage-specific histone modification profiles during Xenopus embryogenesis., Pokrovsky D, Forné I, Straub T, Imhof A, Rupp RAW., PLoS Biol. January 1, 2021; 19 (9): e3001377.                        


Cell-cell contact landscapes in Xenopus gastrula tissues., Barua D, Nagel M, Winklbauer R., Proc Natl Acad Sci U S A. January 1, 2021; 118 (39):


Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula., Kumar V, Goutam RS, Umair Z, Park S, Lee U, Kim J., Cells. January 1, 2021; 10 (10):

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