Papers associated with endoderm (and mix1)

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	Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E., Nat Commun. November 5, 2022; 13 (1): 6681.
	Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.
	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.
	Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage., Castro Colabianchi AM., Biol Open. February 25, 2021; 10 (2):
	Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos., Umair Z., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S., Elife. September 7, 2020; 9
	Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
	A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL., Dev Biol. June 15, 2017; 426 (2): 409-417.
	A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
	Transcription factors Mix1 and VegT, relocalization of vegt mRNA, and conserved endoderm and dorsal specification in frogs., Sudou N., Proc Natl Acad Sci U S A. May 17, 2016; 113 (20): 5628-33.
	Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns., Zheng Z., BMC Syst Biol. January 8, 2014; 8 3.
	Optimal histone H3 to linker histone H1 chromatin ratio is vital for mesodermal competence in Xenopus., Lim CY., Development. February 1, 2013; 140 (4): 853-60.
	Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis., Cao Q., Development. November 1, 2012; 139 (21): 3950-61.
	Self-regulation of the head-inducing properties of the Spemann organizer., Inui M., Proc Natl Acad Sci U S A. September 18, 2012; 109 (38): 15354-9.
	The Mix family of homeobox genes--key regulators of mesendoderm formation during vertebrate development., Pereira LA., Dev Biol. July 15, 2012; 367 (2): 163-77.
	A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus., Szenker E., Cell Rep. June 28, 2012; 1 (6): 730-40.
	Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer., Sudou N., Development. May 1, 2012; 139 (9): 1651-61.
	A gene regulatory network controlling hhex transcription in the anterior endoderm of the organizer., Rankin SA, Rankin SA., Dev Biol. March 15, 2011; 351 (2): 297-310.
	Expression of Siamois and Twin in the blastula Chordin/Noggin signaling center is required for brain formation in Xenopus laevis embryos., Ishibashi H., Mech Dev. January 1, 2008; 125 (1-2): 58-66.
	Mouse homologues of Shisa antagonistic to Wnt and Fgf signalings., Furushima K., Dev Biol. June 15, 2007; 306 (2): 480-92.
	Negative regulation of Activin/Nodal signaling by SRF during Xenopus gastrulation., Yun CH., Development. February 1, 2007; 134 (4): 769-77.
	Amino terminal tyrosine phosphorylation of human MIXL1., Guo W., J Mol Signal. December 5, 2006; 1 6.
	A role for GATA factors in Xenopus gastrulation movements., Fletcher G., Mech Dev. October 1, 2006; 123 (10): 730-45.
	Global analysis of the transcriptional network controlling Xenopus endoderm formation., Sinner D., Development. May 1, 2006; 133 (10): 1955-66.
	Determination of the minimal domains of Mix.3/Mixer required for endoderm development., Doherty JR., Mech Dev. January 1, 2006; 123 (1): 56-66.
	Germ-layer specification and control of cell growth by Ectodermin, a Smad4 ubiquitin ligase., Dupont S., Cell. April 8, 2005; 121 (1): 87-99.
	The ARID domain protein dril1 is necessary for TGF(beta) signaling in Xenopus embryos., Callery EM., Dev Biol. February 15, 2005; 278 (2): 542-59.
	Patterning and tissue movements in a novel explant preparation of the marginal zone of Xenopus laevis., Davidson LA., Gene Expr Patterns. July 1, 2004; 4 (4): 457-66.
	Molecular components of the endoderm specification pathway in Xenopus tropicalis., D'Souza A., Dev Dyn. January 1, 2003; 226 (1): 118-27.
	Molecular regulation of vertebrate early endoderm development., Shivdasani RA., Dev Biol. September 15, 2002; 249 (2): 191-203.
	Effects of heterodimerization and proteolytic processing on Derrière and Nodal activity: implications for mesoderm induction in Xenopus., Eimon PM., Development. July 1, 2002; 129 (13): 3089-103.
	Cloning, expression analysis, and chromosomal localization of murine and human homologues of a Xenopus mix gene., Robb L., Dev Dyn. December 1, 2000; 219 (4): 497-504.
	Development and control of tissue separation at gastrulation in Xenopus., Wacker S., Dev Biol. August 15, 2000; 224 (2): 428-39.
	Neuralization of the Xenopus embryo by inhibition of p300/ CREB-binding protein function., Kato Y., J Neurosci. November 1, 1999; 19 (21): 9364-73.
	Mml, a mouse Mix-like gene expressed in the primitive streak., Pearce JJ., Mech Dev. September 1, 1999; 87 (1-2): 189-92.
	A two-step model for the fate determination of presumptive endodermal blastomeres in Xenopus embryos., Yasuo H., Curr Biol. August 26, 1999; 9 (16): 869-79.
	Cloning of Mix-related homeodomain proteins using fast retrieval of gel shift activities, (FROGS), a technique for the isolation of DNA-binding proteins., Mead PE., Proc Natl Acad Sci U S A. September 15, 1998; 95 (19): 11251-6.
	The role of maternal VegT in establishing the primary germ layers in Xenopus embryos., Zhang J., Cell. August 21, 1998; 94 (4): 515-24.
	Characterization of CMIX, a chicken homeobox gene related to the Xenopus gene mix.1., Peale FV., Mech Dev. July 1, 1998; 75 (1-2): 167-70.
	A role for the vegetally expressed Xenopus gene Mix.1 in endoderm formation and in the restriction of mesoderm to the marginal zone., Lemaire P., Development. July 1, 1998; 125 (13): 2371-80.
	Markers of vertebrate mesoderm induction., Stennard F., Curr Opin Genet Dev. October 1, 1997; 7 (5): 620-7.
	Localization of MAP kinase activity in early Xenopus embryos: implications for endogenous FGF signaling., LaBonne C., Dev Biol. March 1, 1997; 183 (1): 9-20.
	FGF is a prospective competence factor for early activin-type signals in Xenopus mesoderm induction., Cornell RA., Development. August 1, 1995; 121 (8): 2429-37.
	Mix.1, a homeobox mRNA inducible by mesoderm inducers, is expressed mostly in the presumptive endodermal cells of Xenopus embryos., Rosa FM., Cell. June 16, 1989; 57 (6): 965-74.

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