Results 1 - 12 of 12 results
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. , Fisher ME , Segerdell E , Matentzoglu N, Nenni MJ , Fortriede JD , Chu S , Pells TJ , Osumi-Sutherland D, Chaturvedi P , James-Zorn C , Sundararaj N , Lotay VS , Ponferrada V , Wang DZ , Kim E , Agalakov S , Arshinoff BI , Karimi K , Vize PD , Zorn AM ., BMC Bioinformatics. March 22, 2022; 23 (1): 99.
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. , Fortriede JD , Pells TJ , Chu S , Chaturvedi P , Wang D, Fisher ME , James-Zorn C , Wang Y, Nenni MJ , Burns KA , Lotay VS , Ponferrada VG , Karimi K , Zorn AM , Vize PD ., Nucleic Acids Res. January 8, 2020; 48 (D1): D776-D782.
Xenbase: Facilitating the Use of Xenopus to Model Human Disease. , Nenni MJ , Fisher ME , James-Zorn C , Pells TJ , Ponferrada V , Chu S , Fortriede JD , Burns KA , Wang Y, Lotay VS , Wang DZ, Segerdell E , Chaturvedi P , Karimi K , Vize PD , Zorn AM ., Front Physiol. February 1, 2019; 10 154.
Xenbase: a genomic, epigenomic and transcriptomic model organism database. , Karimi K , Fortriede JD , Lotay VS , Burns KA , Wang DZ , Fisher ME , Pells TJ , James-Zorn C , Wang Y, Ponferrada VG , Chu S , Chaturvedi P , Zorn AM , Vize PD ., Nucleic Acids Res. January 4, 2018; 46 (D1): D861-D868.
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database. , James-Zorn C , Ponferrada V , Fisher ME , Burns K , Fortriede J , Segerdell E , Karimi K , Lotay V , Wang DZ , Chu S , Pells T , Wang Y, Vize PD , Zorn A ., Methods Mol Biol. January 1, 2018; 1757 251-305.
Clustered Xenopus keratin genes: A genomic, transcriptomic, and proteomic analysis. , Suzuki KT , Suzuki M , Shigeta M, Fortriede JD , Takahashi S , Mawaribuchi S, Yamamoto T , Taira M , Fukui A ., Dev Biol. June 15, 2017; 426 (2): 384-392.
Genome evolution in the allotetraploid frog Xenopus laevis. , Session AM , Uno Y , Kwon T , Chapman JA, Toyoda A, Takahashi S , Fukui A , Hikosaka A , Suzuki A , Kondo M, van Heeringen SJ, Quigley I , Heinz S, Ogino H , Ochi H , Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T , Watanabe M, Bogdanovic O , Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T , Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y , Yamamoto TS , Takagi C, Heald R , Miller K, Haudenschild C, Kitzman J , Nakayama T , Izutsu Y , Robert J , Fortriede J , Burns K , Lotay V , Karimi K , Yasuoka Y, Dichmann DS , Flajnik MF , Houston DW , Shendure J, DuPasquier L , Vize PD , Zorn AM , Ito M, Marcotte EM , Wallingford JB , Ito Y , Asashima M , Ueno N , Matsuda Y , Veenstra GJ , Fujiyama A, Harland RM , Taira M , Rokhsar DS ., Nature. October 20, 2016; 538 (7625): 336-343.
The Xenopus ORFeome: A resource that enables functional genomics. , Grant IM, Balcha D, Hao T, Shen Y, Trivedi P, Patrushev I , Fortriede JD , Karpinka JB , Liu L, Zorn AM , Stukenberg PT , Hill DE , Gilchrist MJ ., Dev Biol. December 15, 2015; 408 (2): 345-57.
Xenbase: Core features, data acquisition, and data processing. , James-Zorn C , Ponferrada VG , Burns KA , Fortriede JD , Lotay VS , Liu Y , Brad Karpinka J, Karimi K , Zorn AM , Vize PD ., Genesis. August 1, 2015; 53 (8): 486-97.
Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes. , Karpinka JB, Fortriede JD , Burns KA , James-Zorn C , Ponferrada VG , Lee J , Karimi K , Zorn AM , Vize PD ., Nucleic Acids Res. January 1, 2015; 43 (Database issue): D756-63.
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase. , Segerdell E , Ponferrada VG , James-Zorn C , Burns KA , Fortriede JD , Dahdul WM, Vize PD , Zorn AM ., J Biomed Semantics. October 18, 2013; 4 (1): 31.
Xenbase: expansion and updates of the Xenopus model organism database. , James-Zorn C , Ponferrada VG , Jarabek CJ , Burns KA , Segerdell EJ , Lee J , Snyder K , Bhattacharyya B, Karpinka JB, Fortriede J , Bowes JB , Zorn AM , Vize PD ., Nucleic Acids Res. January 1, 2013; 41 (Database issue): D865-70.