Results 1 - 50 of 81 results
Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y, Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
Evolution of hes gene family in vertebrates: the hes5 cluster genes have specifically increased in frogs. , Kuretani A, Yamamoto T , Taira M , Michiue T ., BMC Ecol Evol. July 29, 2021; 21 (1): 147.
Quantitative analyses reveal extracellular dynamics of Wnt ligands in Xenopus embryos. , Mii Y , Nakazato K, Pack CG, Ikeda T, Sako Y, Mochizuki A, Taira M , Takada S., Elife. April 27, 2021; 10
LIM homeodomain proteins and associated partners: Then and now. , Yasuoka Y, Taira M ., Curr Top Dev Biol. January 1, 2021; 145 113-166.
Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus. , Yasuoka Y, Tando Y, Kubokawa K, Taira M ., Zoological Lett. August 2, 2019; 5 27.
Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation. , Paraiso KD , Blitz IL , Coley M, Cheung J, Sudou N , Taira M , Cho KWY ., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
De novo transcription of multiple Hox cluster genes takes place simultaneously in early Xenopus tropicalis embryos. , Kondo M, Matsuo M, Igarashi K, Haramoto Y , Yamamoto T , Yasuoka Y, Taira M ., Biol Open. March 4, 2019; 8 (3):
Microinjection of DNA Constructs into Xenopus Embryos for Gene Misexpression and cis-Regulatory Module Analysis. , Yasuoka Y, Taira M ., Cold Spring Harb Protoc. January 2, 2019; 2019 (1):
Phosphorylation states change Otx2 activity for cell proliferation and patterning in the Xenopus embryo. , Satou Y, Minami K, Hosono E, Okada H, Yasuoka Y, Shibano T, Tanaka T, Taira M ., Development. March 12, 2018; 145 (5):
Tissue-Specific Gene Inactivation in Xenopus laevis: Knockout of lhx1 in the Kidney with CRISPR/Cas9. , DeLay BD , Corkins ME, Hanania HL, Salanga M , Deng JM, Sudou N , Taira M , Horb ME , Miller RK ., Genetics. February 1, 2018; 208 (2): 673-686.
Roles of two types of heparan sulfate clusters in Wnt distribution and signaling in Xenopus. , Mii Y , Yamamoto T , Takada R, Mizumoto S, Matsuyama M, Yamada S, Takada S, Taira M ., Nat Commun. December 7, 2017; 8 (1): 1973.
Comprehensive analyses of hox gene expression in Xenopus laevis embryos and adult tissues. , Kondo M, Yamamoto T , Takahashi S , Taira M ., Dev Growth Differ. August 1, 2017; 59 (6): 526-539.
Sex chromosome differentiation and the W- and Z-specific loci in Xenopus laevis. , Mawaribuchi S, Takahashi S , Wada M, Uno Y , Matsuda Y , Kondo M, Fukui A , Takamatsu N, Taira M , Ito M., Dev Biol. June 15, 2017; 426 (2): 393-400.
Genes coding for cyclin-dependent kinase inhibitors are fragile in Xenopus. , Tanaka T, Ochi H , Takahashi S , Ueno N , Taira M ., Dev Biol. June 15, 2017; 426 (2): 291-300.
Identification and comparative analyses of Siamois cluster genes in Xenopus laevis and tropicalis. , Haramoto Y , Saijyo T, Tanaka T, Furuno N , Suzuki A , Ito Y , Kondo M, Taira M , Takahashi S ., Dev Biol. June 15, 2017; 426 (2): 374-383.
Genomic organization and modulation of gene expression of the TGF-β and FGF pathways in the allotetraploid frog Xenopus laevis. , Suzuki A , Yoshida H, van Heeringen SJ, Takebayashi-Suzuki K, Veenstra GJC , Taira M ., Dev Biol. June 15, 2017; 426 (2): 336-359.
Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis. , Suzuki A , Uno Y , Takahashi S , Grimwood J, Schmutz J, Mawaribuchi S, Yoshida H, Takebayashi-Suzuki K, Ito M, Matsuda Y , Rokhsar D , Taira M ., Dev Biol. June 15, 2017; 426 (2): 236-244.
Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. , Watanabe M, Yasuoka Y, Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H , Ogino H , Fukui A , Taira M , Kinoshita T ., Dev Biol. June 15, 2017; 426 (2): 301-324.
Clustered Xenopus keratin genes: A genomic, transcriptomic, and proteomic analysis. , Suzuki KT , Suzuki M , Shigeta M, Fortriede JD , Takahashi S , Mawaribuchi S, Yamamoto T , Taira M , Fukui A ., Dev Biol. June 15, 2017; 426 (2): 384-392.
High variability of expression profiles of homeologous genes for Wnt, Hh, Notch, and Hippo signaling pathways in Xenopus laevis. , Michiue T , Yamamoto T , Yasuoka Y, Goto T , Ikeda T, Nagura K, Nakayama T , Taira M , Kinoshita T ., Dev Biol. June 15, 2017; 426 (2): 270-290.
Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program. , Charney RM , Forouzmand E, Cho JS, Cheung J, Paraiso KD , Yasuoka Y, Takahashi S , Taira M , Blitz IL , Xie X, Cho KW ., Dev Cell. March 27, 2017; 40 (6): 595-607.e4.
Genome evolution in the allotetraploid frog Xenopus laevis. , Session AM , Uno Y , Kwon T , Chapman JA, Toyoda A, Takahashi S , Fukui A , Hikosaka A , Suzuki A , Kondo M, van Heeringen SJ, Quigley I , Heinz S, Ogino H , Ochi H , Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T , Watanabe M, Bogdanovic O , Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T , Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y , Yamamoto TS , Takagi C, Heald R , Miller K, Haudenschild C, Kitzman J , Nakayama T , Izutsu Y , Robert J , Fortriede J , Burns K , Lotay V , Karimi K , Yasuoka Y, Dichmann DS , Flajnik MF , Houston DW , Shendure J, DuPasquier L , Vize PD , Zorn AM , Ito M, Marcotte EM , Wallingford JB , Ito Y , Asashima M , Ueno N , Matsuda Y , Veenstra GJ , Fujiyama A, Harland RM , Taira M , Rokhsar DS ., Nature. October 20, 2016; 538 (7625): 336-343.
Transcription factors Mix1 and VegT, relocalization of vegt mRNA, and conserved endoderm and dorsal specification in frogs. , Sudou N , Garcés-Vásconez A, López-Latorre MA, Taira M , Del Pino EM ., Proc Natl Acad Sci U S A. May 17, 2016; 113 (20): 5628-33.
The Inner Nuclear Membrane Protein Nemp1 Is a New Type of RanGTP-Binding Protein in Eukaryotes. , Shibano T, Mamada H, Hakuno F, Takahashi S , Taira M ., PLoS One. May 6, 2015; 10 (5): e0127271.
The medaka dhc2 mutant reveals conserved and distinct mechanisms of Hedgehog signaling in teleosts. , Yamamoto T , Tsukahara T, Ishiguro T, Hagiwara H, Taira M , Takeda H., BMC Dev Biol. February 3, 2015; 15 9.
A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis. , Matsuda Y , Uno Y , Kondo M, Gilchrist MJ , Zorn AM , Rokhsar DS , Schmid M, Taira M ., Cytogenet Genome Res. January 1, 2015; 145 (3-4): 187-91.
Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification. , Yasuoka Y, Suzuki Y, Takahashi S , Someya H, Sudou N , Haramoto Y , Cho KW , Asashima M , Sugano S, Taira M ., Nat Commun. July 9, 2014; 5 4322.
Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer. , Sudou N , Yamamoto S, Ogino H , Taira M ., Development. May 1, 2012; 139 (9): 1651-61.
Comparison of Lim1 expression in embryos of frogs with different modes of reproduction. , Venegas-Ferrin M, Sudou N , Taira M , del Pino EM ., Int J Dev Biol. January 1, 2010; 54 (1): 195-202.
Secreted Frizzled-related proteins enhance the diffusion of Wnt ligands and expand their signalling range. , Mii Y , Taira M ., Development. December 1, 2009; 136 (24): 4083-8.
The keratin-related Ouroboros proteins function as immune antigens mediating tail regression in Xenopus metamorphosis. , Mukaigasa K, Hanasaki A, Maéno M, Fujii H, Hayashida S, Itoh M, Kobayashi M, Tochinai S, Hatta M, Iwabuchi K, Taira M , Onoé K, Izutsu Y ., Proc Natl Acad Sci U S A. October 27, 2009; 106 (43): 18309-14.
The RNA-binding protein Mex3b has a fine-tuning system for mRNA regulation in early Xenopus development. , Takada H, Kawana T, Ito Y , Kikuno RF, Mamada H, Araki T, Koga H, Asashima M , Taira M ., Development. July 1, 2009; 136 (14): 2413-22.
Evolutionary origins of blastoporal expression and organizer activity of the vertebrate gastrula organizer gene lhx1 and its ancient metazoan paralog lhx3. , Yasuoka Y, Kobayashi M, Kurokawa D, Akasaka K, Saiga H, Taira M ., Development. June 1, 2009; 136 (12): 2005-14.
Involvement of an inner nuclear membrane protein, Nemp1, in Xenopus neural development through an interaction with the chromatin protein BAF. , Mamada H, Takahashi N , Taira M ., Dev Biol. March 15, 2009; 327 (2): 497-507.
Recombinant Tol2 transposase with activity in Xenopus embryos. , Shibano T, Takeda M, Suetake I, Kawakami K, Asashima M , Tajima S , Taira M ., FEBS Lett. September 4, 2007; 581 (22): 4333-6.
A comparative analysis of frog early development. , del Pino EM , Venegas-Ferrín M, Romero-Carvajal A, Montenegro-Larrea P, Sáenz-Ponce N, Moya IM, Alarcón I, Sudou N , Yamamoto S, Taira M ., Proc Natl Acad Sci U S A. July 17, 2007; 104 (29): 11882-8.
Man1, an inner nuclear membrane protein, regulates vascular remodeling by modulating transforming growth factor beta signaling. , Ishimura A, Ng JK, Taira M , Young SG, Osada S., Development. October 1, 2006; 133 (19): 3919-28.
Tol2 transposon-mediated transgenesis in Xenopus tropicalis. , Hamlet MR, Yergeau DA, Kuliyev E, Takeda M, Taira M , Kawakami K, Mead PE ., Genesis. September 1, 2006; 44 (9): 438-45.
Spliced isoforms of LIM-domain-binding protein (CLIM/ NLI/Ldb) lacking the LIM-interaction domain. , Tran YH, Xu Z, Kato A, Mistry AC, Goya Y, Taira M , Brandt SJ, Hirose S., J Biochem. July 1, 2006; 140 (1): 105-19.
Xenopus ADAMTS1 negatively modulates FGF signaling independent of its metalloprotease activity. , Suga A, Hikasa H, Taira M ., Dev Biol. July 1, 2006; 295 (1): 26-39.
Role of crescent in convergent extension movements by modulating Wnt signaling in early Xenopus embryogenesis. , Shibata M , Itoh M, Hikasa H, Taira S , Taira M ., Mech Dev. December 1, 2005; 122 (12): 1322-39.
Identification of target genes for the Xenopus Hes-related protein XHR1, a prepattern factor specifying the midbrain- hindbrain boundary. , Takada H, Hattori D, Kitayama A, Ueno N , Taira M ., Dev Biol. July 1, 2005; 283 (1): 253-67.
Systematic screening for genes specifically expressed in the anterior neuroectoderm during early Xenopus development. , Takahashi N , Tochimoto N, Ohmori SY, Mamada H, Itoh M, Inamori M, Shinga J , Osada S, Taira M ., Int J Dev Biol. January 1, 2005; 49 (8): 939-51.
Cellular FLIP inhibits beta-catenin ubiquitylation and enhances Wnt signaling. , Naito M, Katayama R, Ishioka T, Suga A, Takubo K, Nanjo M, Hashimoto C, Taira M , Takada S, Takada R, Kitagawa M, Matsuzawa S, Reed JC, Tsuruo T., Mol Cell Biol. October 1, 2004; 24 (19): 8418-27.
Excision of the Tol2 transposable element of the medaka fish Oryzias latipes in Xenopus laevis and Xenopus tropicalis. , Kawakami K, Imanaka K, Itoh M, Taira M ., Gene. August 18, 2004; 338 (1): 93-8.
Expression patterns of Xenopus FGF receptor-like 1/ nou-darake in early Xenopus development resemble those of planarian nou-darake and Xenopus FGF8. , Hayashi S, Itoh M, Taira S, Agata K, Taira M ., Dev Dyn. August 1, 2004; 230 (4): 700-7.
Selective degradation of excess Ldb1 by Rnf12/ RLIM confers proper Ldb1 expression levels and Xlim-1/ Ldb1 stoichiometry in Xenopus organizer functions. , Hiratani I, Yamamoto N, Mochizuki T , Ohmori SY, Taira M ., Development. September 1, 2003; 130 (17): 4161-75.
Molecular link in the sequential induction of the Spemann organizer: direct activation of the cerberus gene by Xlim-1, Xotx2, Mix.1, and Siamois, immediately downstream from Nodal and Wnt signaling. , Yamamoto S, Hikasa H, Ono H, Taira M ., Dev Biol. May 1, 2003; 257 (1): 190-204.
XMAN1, an inner nuclear membrane protein, antagonizes BMP signaling by interacting with Smad1 in Xenopus embryos. , Osada S, Ohmori SY, Taira M ., Development. May 1, 2003; 130 (9): 1783-94.
Gene expression pattern analysis of the tight junction protein, Claudin, in the early morphogenesis of Xenopus embryos. , Fujita M, Itoh M, Shibata M , Taira S, Taira M ., Mech Dev. December 1, 2002; 119 Suppl 1 S27-30.