Papers associated with atr

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	Resection of DNA double-strand breaks activates Mre11-Rad50-Nbs1- and Rad9-Hus1-Rad1-dependent mechanisms that redundantly promote ATR checkpoint activation and end processing in Xenopus egg extracts., Tatsukawa K, Sakamoto R, Kawasoe Y, Kubota Y, Tsurimoto T, Takahashi TS, Ohashi E., Nucleic Acids Res. April 12, 2024; 52 (6): 3146-3163.
	Mebendazole preferentially inhibits cilia formation and exerts anticancer activity by synergistically augmenting DNA damage., Hong J, Kwon KY, Jang DG, Kwon T, Yoon H, Park TJ., Biomed Pharmacother. March 20, 2024; 174 116434.
	Developmental regulation of cellular metabolism is required for intestinal elongation and rotation., Grzymkowski JK, Chiu YC, Jima DD, Wyatt BH, Jayachandran S, Stutts WL, Nascone-Yoder NM., Development. February 15, 2024; 151 (4):
	APE1 recruits ATRIP to ssDNA in an RPA-dependent and -independent manner to promote the ATR DNA damage response., Lin Y, Li J, Zhao H, McMahon A, McGhee K, Yan S., Elife. May 22, 2023; 12
	MRN-dependent and independent pathways for recruitment of TOPBP1 to DNA double-strand breaks., Montales K, Ruis K, Lindsay H, Michael WM., PLoS One. August 2, 2022; 17 (8): e0271905.
	The p97 segregase cofactor Ubxn7 facilitates replisome disassembly during S-phase., Tarcan Z, Poovathumkadavil D, Skagia A, Gambus A., J Biol Chem. August 1, 2022; 298 (8): 102234.
	Delineation of a minimal topoisomerase II binding protein 1 for regulated activation of ATR at DNA double-strand breaks., Ruis K, Huynh O, Montales K, Barr NA, Michael WM., J Biol Chem. July 1, 2022; 298 (7): 101992.
	Microplastics from miscellaneous plastic wastes: Physico-chemical characterization and impact on fish and amphibian development., Bonfanti P, Colombo A, Saibene M, Motta G, Saliu F, Catelani T, Mehn D, La Spina R, Ponti J, Cella C, Floris P, Mantecca P., Ecotoxicol Environ Saf. December 1, 2021; 225 112775.
	Apurinic/Apyrimidinic Endonuclease 2 (APE2): An ancillary enzyme for contextual base excision repair mechanisms to preserve genome stability., Chaudhari S, Ware AP, Jayaram P, Gorthi SP, El-Khamisy SF, Satyamoorthy K., Biochimie. November 1, 2021; 190 70-90.
	LRR1-mediated replisome disassembly promotes DNA replication by recycling replisome components., Fan Y, Köberlin MS, Ratnayeke N, Liu C, Deshpande M, Gerhardt J, Meyer T., J Cell Biol. August 2, 2021; 220 (8):
	Inhibition of DNA replication initiation by silver nanoclusters., Tao Y, Aparicio T, Li M, Leong KW, Zha S, Gautier J., Nucleic Acids Res. May 21, 2021; 49 (9): 5074-5083.
	Structure-function analysis of TOPBP1's role in ATR signaling using the DSB-mediated ATR activation in Xenopus egg extracts (DMAX) system., Montales K, Kim A, Ruis K, Michael WM., Sci Rep. January 11, 2021; 11 (1): 467.
	Biochemical analysis of TOPBP1 oligomerization., Kim A, Montales K, Ruis K, Senebandith H, Gasparyan H, Cowan Q, Michael WM., DNA Repair (Amst). December 1, 2020; 96 102973.
	Nocodazole-Induced Expression and Phosphorylation of Anillin and Other Mitotic Proteins Are Decreased in DNA-Dependent Protein Kinase Catalytic Subunit-Deficient Cells and Rescued by Inhibition of the Anaphase-Promoting Complex/Cyclosome with proTAME but Not Apcin., Douglas P, Ye R, Radhamani S, Cobban A, Jenkins NP, Bartlett E, Roveredo J, Kettenbach AN, Lees-Miller SP., Mol Cell Biol. June 15, 2020; 40 (13):
	How do cells sense DNA lesions?, Colombo CV, Gnugnoli M, Gobbini E, Longhese MP., Biochem Soc Trans. April 29, 2020; 48 (2): 677-691.
	Distinct roles of XRCC1 in genome integrity in Xenopus egg extracts., Cupello S, Lin Y, Yan S., Biochem J. December 23, 2019; 476 (24): 3791-3804.
	RPA-coated single-stranded DNA promotes the ETAA1-dependent activation of ATR., Lyu K, Kumagai A, Dunphy WG., Cell Cycle. April 1, 2019; 18 (8): 898-913.
	Mitotic CDK Promotes Replisome Disassembly, Fork Breakage, and Complex DNA Rearrangements., Deng L, Wu RA, Sonneville R, Kochenova OV, Labib K, Pellman D, Walter JC., Mol Cell. March 7, 2019; 73 (5): 915-929.e6.
	TRAIP is a master regulator of DNA interstrand crosslink repair., Wu RA, Semlow DR, Kamimae-Lanning AN, Kochenova OV, Chistol G, Hodskinson MR, Amunugama R, Sparks JL, Wang M, Deng L, Mimoso CA, Low E, Patel KJ, Walter JC., Nature. March 1, 2019; 567 (7747): 267-272.
	Claspin - checkpoint adaptor and DNA replication factor., Smits VAJ, Cabrera E, Freire R, Gillespie DA., FEBS J. February 1, 2019; 286 (3): 441-455.
	Methods for Studying DNA Single-Strand Break Repair and Signaling in Xenopus laevis Egg Extracts., Lin Y, Ha A, Yan S., Methods Mol Biol. January 1, 2019; 1999 161-172.
	APE2 promotes DNA damage response pathway from a single-strand break., Lin Y, Bai L, Cupello S, Hossain MA, Deem B, McLeod M, Raj J, Yan S., Nucleic Acids Res. March 16, 2018; 46 (5): 2479-2494.
	HELLS and CDCA7 comprise a bipartite nucleosome remodeling complex defective in ICF syndrome., Jenness C, Giunta S, Müller MM, Kimura H, Muir TW, Funabiki H., Proc Natl Acad Sci U S A. January 30, 2018; 115 (5): E876-E885.
	An ATR-dependent function for the Ddx19 RNA helicase in nuclear R-loop metabolism., Hodroj D, Recolin B, Serhal K, Martinez S, Tsanov N, Abou Merhi R, Maiorano D., EMBO J. May 2, 2017; 36 (9): 1182-1198.
	Structural insights into the nucleotide base specificity of P2X receptors., Kasuya G, Fujiwara Y, Tsukamoto H, Morinaga S, Ryu S, Touhara K, Ishitani R, Furutani Y, Hattori M, Nureki O., Sci Rep. March 23, 2017; 7 45208.
	Reversal of DDK-Mediated MCM Phosphorylation by Rif1-PP1 Regulates Replication Initiation and Replisome Stability Independently of ATR/Chk1., Alver RC, Chadha GS, Gillespie PJ, Blow JJ., Cell Rep. March 7, 2017; 18 (10): 2508-2520.
	APE2 Zf-GRF facilitates 3'-5' resection of DNA damage following oxidative stress., Wallace BD, Berman Z, Mueller GA, Lin Y, Chang T, Andres SN, Wojtaszek JL, DeRose EF, Appel CD, London RE, Yan S, Williams RS., Proc Natl Acad Sci U S A. January 10, 2017; 114 (2): 304-309.
	Xenopus egg extract to study regulation of genome-wide and locus-specific DNA replication., Raspelli E, Falbo L, Costanzo V., Genesis. January 1, 2017; 55 (1-2):
	Replication, checkpoint suppression and structure of centromeric DNA., Romeo F, Falbo L, Costanzo V., Nucleus. November 1, 2016; 7 (6): 540-546.
	Mdc1 modulates the interaction between TopBP1 and the MRN complex during DNA damage checkpoint responses., Choi SH, Yoo HY., Biochem Biophys Res Commun. October 7, 2016; 479 (1): 5-11.
	Xenopus Mcm10 is a CDK-substrate required for replication fork stability., Chadha GS, Gambus A, Gillespie PJ, Blow JJ., Cell Cycle. August 17, 2016; 15 (16): 2183-2195.
	Secreted Isoform of Human Lynx1 (SLURP-2): Spatial Structure and Pharmacology of Interactions with Different Types of Acetylcholine Receptors., Lyukmanova EN, Shulepko MA, Shenkarev ZO, Bychkov ML, Paramonov AS, Chugunov AO, Kulbatskii DS, Arvaniti M, Dolejsi E, Schaer T, Arseniev AS, Efremov RG, Thomsen MS, Dolezal V, Bertrand D, Dolgikh DA, Kirpichnikov MP., Sci Rep. August 3, 2016; 6 30698.
	Non-homologous end joining repair in Xenopus egg extract., Zhu S, Peng A., Sci Rep. June 21, 2016; 6 27797.
	Direct Binding to Replication Protein A (RPA)-coated Single-stranded DNA Allows Recruitment of the ATR Activator TopBP1 to Sites of DNA Damage., Acevedo J, Yan S, Michael WM., J Biol Chem. June 17, 2016; 291 (25): 13124-31.
	Centromeric DNA replication reconstitution reveals DNA loops and ATR checkpoint suppression., Aze A, Sannino V, Soffientini P, Bachi A, Costanzo V., Nat Cell Biol. June 1, 2016; 18 (6): 684-91.
	Replicating repetitive DNA., Tognetti S, Speck C., Nat Cell Biol. May 27, 2016; 18 (6): 593-4.
	Perfluoroalkylated Substance Effects in Xenopus laevis A6 Kidney Epithelial Cells Determined by ATR-FTIR Spectroscopy and Chemometric Analysis., Gorrochategui E, Lacorte S, Tauler R, Martin FL., Chem Res Toxicol. May 16, 2016; 29 (5): 924-32.
	Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes., Johnson JR, Santos SD, Johnson T, Pieper U, Strumillo M, Wagih O, Sali A, Krogan NJ, Beltrao P., PLoS Comput Biol. August 27, 2015; 11 (8): e1004362.
	REV1 is important for the ATR-Chk1 DNA damage response pathway in Xenopus egg extracts., DeStephanis D, McLeod M, Yan S., Biochem Biophys Res Commun. May 8, 2015; 460 (3): 609-15.
	14-3-3 proteins restrain the Exo1 nuclease to prevent overresection., Chen X, Kim IK, Honaker Y, Paudyal SC, Koh WK, Sparks M, Li S, Piwnica-Worms H, Ellenberger T, You Z., J Biol Chem. May 8, 2015; 290 (19): 12300-12.
	The nuclease FAN1 is involved in DNA crosslink repair in Arabidopsis thaliana independently of the nuclease MUS81., Herrmann NJ, Knoll A, Puchta H., Nucleic Acids Res. April 20, 2015; 43 (7): 3653-66.
	Optogenetic manipulation of cGMP in cells and animals by the tightly light-regulated guanylyl-cyclase opsin CyclOp., Gao S, Nagpal J, Schneider MW, Kozjak-Pavlovic V, Nagel G, Gottschalk A., Nat Commun. January 19, 2015; 6 8046.
	Conversion of a light-driven proton pump into a light-gated ion channel., Vogt A, Guo Y, Tsunoda SP, Kateriya S, Elstner M, Hegemann P., Sci Rep. January 12, 2015; 5 16450.
	Importin β-dependent nuclear import of TopBP1 in ATR-Chk1 checkpoint in Xenopus egg extracts., Bai L, Michael WM, Yan S., Cell Signal. May 1, 2014; 26 (5): 857-67.
	The evolutionary history of vertebrate cranial placodes II. Evolution of ectodermal patterning., Schlosser G, Patthey C, Shimeld SM., Dev Biol. May 1, 2014; 389 (1): 98-119.
	PCNA promotes processive DNA end resection by Exo1., Chen X, Paudyal SC, Chin RI, You Z., Nucleic Acids Res. November 1, 2013; 41 (20): 9325-38.
	DNA polymerase κ-dependent DNA synthesis at stalled replication forks is important for CHK1 activation., Bétous R, Pillaire MJ, Pierini L, van der Laan S, Recolin B, Ohl-Séguy E, Guo C, Niimi N, Grúz P, Nohmi T, Friedberg E, Cazaux C, Maiorano D, Hoffmann JS., EMBO J. July 31, 2013; 32 (15): 2172-85.
	ATR phosphorylates SMARCAL1 to prevent replication fork collapse., Couch FB, Bansbach CE, Driscoll R, Luzwick JW, Glick GG, Bétous R, Carroll CM, Jung SY, Qin J, Cimprich KA, Cortez D., Genes Dev. July 15, 2013; 27 (14): 1610-23.
	APE2 is required for ATR-Chk1 checkpoint activation in response to oxidative stress., Willis J, Patel Y, Lentz BL, Yan S., Proc Natl Acad Sci U S A. June 25, 2013; 110 (26): 10592-7.
	The Mre11-Rad50-Nbs1 (MRN) complex has a specific role in the activation of Chk1 in response to stalled replication forks., Lee J, Dunphy WG., Mol Biol Cell. May 1, 2013; 24 (9): 1343-53.

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