Papers associated with avd

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	The USP46 complex deubiquitylates LRP6 to promote Wnt/β-catenin signaling., Ng VH, Spencer Z, Neitzel LR, Nayak A, Loberg MA, Shen C, Kassel SN, Kroh HK, An Z, Anthony CC, Bryant JM, Lawson A, Goldsmith L, Benchabane H, Hansen AG, Li J, D'Souza S, Lebensohn AM, Rohatgi R, Weiss WA, Weiss VL, Williams C, Hong CC, Robbins DJ, Ahmed Y, Lee E., Nat Commun. October 5, 2023; 14 (1): 6173.
	Neuronal membrane proteasomes regulate neuronal circuit activity in vivo and are required for learning-induced behavioral plasticity., He HY, Ahsan A, Bera R, McLain N, Faulkner R, Ramachandran KV, Margolis SS, Cline HT., Proc Natl Acad Sci U S A. January 17, 2023; 120 (3): e2216537120.
	Proteomic screen reveals diverse protein transport between connected neurons in the visual system., Schiapparelli LM, Sharma P, He HY, Li J, Shah SH, McClatchy DB, Ma Y, Liu HH, Goldberg JL, Yates JR, Cline HT., Cell Rep. January 25, 2022; 38 (4): 110287.
	Identification of the centrosomal maturation factor SSX2IP as a Wtip-binding partner by targeted proximity biotinylation., Reis AH, Xiang B, Ossipova O, Itoh K, Sokol SY., PLoS One. January 1, 2021; 16 (10): e0259068.
	The transition state and regulation of γ-TuRC-mediated microtubule nucleation revealed by single molecule microscopy., Thawani A, Rale MJ, Coudray N, Bhabha G, Stone HA, Shaevitz JW, Petry S., Elife. June 15, 2020; 9
	The tumor suppressor PTPRK promotes ZNRF3 internalization and is required for Wnt inhibition in the Spemann organizer., Chang LS, Kim M, Glinka A, Reinhard C, Niehrs C., Elife. January 14, 2020; 9
	Analyses of epithelial Na+ channel variants reveal that an extracellular β-ball domain critically regulates ENaC gating., Wang X, Chen J, Shi S, Sheng S, Kleyman TR., J Biol Chem. November 8, 2019; 294 (45): 16765-16775.
	Histones H3 and H4 require their relevant amino-tails for efficient nuclear import and replication-coupled chromatin assembly in vivo., Ejlassi A, Menil-Philippot V, Galvani A, Thiriet C., Sci Rep. June 8, 2017; 7 (1): 3050.
	Rfx2 Stabilizes Foxj1 Binding at Chromatin Loops to Enable Multiciliated Cell Gene Expression., Quigley IK, Kintner C., PLoS Genet. January 19, 2017; 13 (1): e1006538.
	Molecular Mechanism of Disease-Associated Mutations in the Pre-M1 Helix of NMDA Receptors and Potential Rescue Pharmacology., Ogden KK, Chen W, Swanger SA, McDaniel MJ, Fan LZ, Hu C, Tankovic A, Kusumoto H, Kosobucki GJ, Schulien AJ, Su Z, Pecha J, Bhattacharya S, Petrovski S, Cohen AE, Aizenman E, Traynelis SF, Yuan H., PLoS Genet. January 17, 2017; 13 (1): e1006536.
	Genome evolution in the allotetraploid frog Xenopus laevis., Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS., Nature. October 20, 2016; 538 (7625): 336-343.
	The structure of ends determines the pathway choice and Mre11 nuclease dependency of DNA double-strand break repair., Liao S, Tammaro M, Yan H., Nucleic Acids Res. July 8, 2016; 44 (12): 5689-701.
	DNA double-strand breaks with 5' adducts are efficiently channeled to the DNA2-mediated resection pathway., Tammaro M, Liao S, Beeharry N, Yan H., Nucleic Acids Res. January 8, 2016; 44 (1): 221-31.
	Cysteine accessibility probes timing and extent of NBD separation along the dimer interface in gating CFTR channels., Chaves LA, Gadsby DC., J Gen Physiol. April 1, 2015; 145 (4): 261-83.
	Delineating the extracellular water-accessible surface of the proton-coupled folate transporter., Duddempudi PK, Goyal R, Date SS, Jansen M., PLoS One. October 8, 2013; 8 (10): e78301.
	Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus eye and neural development., Xu Y, Xu Y, Xu C, Kato A, Tempel W, Abreu JG, Bian C, Hu Y, Hu D, Zhao B, Cerovina T, Diao J, Wu F, He HH, Cui Q, Clark E, Ma C, Barbara A, Veenstra GJ, Xu G, Kaiser UB, Liu XS, Sugrue SP, He X, Min J, Kato Y, Shi YG., Cell. December 7, 2012; 151 (6): 1200-13.
	Increased imaging speed and force sensitivity for bio-applications with small cantilevers using a conventional AFM setup., Leitner M, Fantner GE, Fantner EJ, Ivanova K, Ivanov T, Rangelow I, Ebner A, Rangl M, Tang J, Hinterdorfer P., Micron. December 1, 2012; 43 (12): 1399-407.
	A new human NHERF1 mutation decreases renal phosphate transporter NPT2a expression by a PTH-independent mechanism., Courbebaisse M, Leroy C, Bakouh N, Salaün C, Beck L, Grandchamp B, Planelles G, Hall RA, Friedlander G, Prié D., PLoS One. January 1, 2012; 7 (4): e34764.
	Activity-based labeling of matrix metalloproteinases in living vertebrate embryos., Keow JY, Pond ED, Cisar JS, Cravatt BF, Crawford BD., PLoS One. January 1, 2012; 7 (8): e43434.
	Purified E255L mutant SERCA1a and purified PfATP6 are sensitive to SERCA-type inhibitors but insensitive to artemisinins., Cardi D, Pozza A, Arnou B, Marchal E, Clausen JD, Andersen JP, Krishna S, Møller JV, le Maire M, Jaxel C., J Biol Chem. August 20, 2010; 285 (34): 26406-16.
	G2 phase chromatin lacks determinants of replication timing., Lu J, Li F, Murphy CS, Davidson MW, Gilbert DM., J Cell Biol. June 14, 2010; 189 (6): 967-80.
	AFM imaging of functionalized carbon nanotubes on biological membranes., Lamprecht C, Liashkovich I, Neves V, Danzberger J, Heister E, Rangl M, Coley HM, McFadden J, Flahaut E, Gruber HJ, Hinterdorfer P, Kienberger F, Ebner A., Nanotechnology. October 28, 2009; 20 (43): 434001.
	Structural and functional characteristics of xenavidin, the first frog avidin from Xenopus tropicalis., Määttä JA, Helppolainen SH, Hytönen VP, Johnson MS, Kulomaa MS, Airenne TT, Nordlund HR., BMC Struct Biol. September 29, 2009; 9 63.
	Interactions between innexins UNC-7 and UNC-9 mediate electrical synapse specificity in the Caenorhabditis elegans locomotory nervous system., Starich TA, Xu J, Skerrett IM, Nicholson BJ, Shaw JE., Neural Dev. May 11, 2009; 4 16.
	Identification of structural and functional O-linked N-acetylglucosamine-bearing proteins in Xenopus laevis oocyte., Dehennaut V, Slomianny MC, Page A, Vercoutter-Edouart AS, Jessus C, Michalski JC, Vilain JP, Bodart JF, Lefebvre T., Mol Cell Proteomics. November 1, 2008; 7 (11): 2229-45.
	The highly conserved nuclear lamin Ig-fold binds to PCNA: its role in DNA replication., Shumaker DK, Solimando L, Sengupta K, Shimi T, Adam SA, Grunwald A, Strelkov SV, Aebi U, Cardoso MC, Goldman RD., J Cell Biol. April 21, 2008; 181 (2): 269-80.
	Analysis of terminal sugar moieties and species-specificities of acrosome reaction-inducing substance in Xenopus (ARISX)., Ueda Y, Imaizumi C, Kubo H, Sato K, Fukami Y, Iwao Y., Dev Growth Differ. September 1, 2007; 49 (7): 591-601.
	Cannabinoid action in the olfactory epithelium., Czesnik D, Schild D, Kuduz J, Manzini I., Proc Natl Acad Sci U S A. February 20, 2007; 104 (8): 2967-72.
	Reconstitution of invertebrate glutamate receptor function depends on stargazin-like proteins., Walker CS, Brockie PJ, Madsen DM, Francis MM, Zheng Y, Koduri S, Mellem JE, Strutz-Seebohm N, Maricq AV., Proc Natl Acad Sci U S A. July 11, 2006; 103 (28): 10781-6.
	ATP activates both receptor and sustentacular supporting cells in the olfactory epithelium of Xenopus laevis tadpoles., Czesnik D, Kuduz J, Schild D, Manzini I., Eur J Neurosci. January 1, 2006; 23 (1): 119-28.
	Activation of membrane receptors by a neurotransmitter conjugate designed for surface attachment., Vu TQ, Chowdhury S, Muni NJ, Qian H, Standaert RF, Pepperberg DR., Biomaterials. May 1, 2005; 26 (14): 1895-903.
	Shisa promotes head formation through the inhibition of receptor protein maturation for the caudalizing factors, Wnt and FGF., Yamamoto A, Nagano T, Takehara S, Hibi M, Aizawa S., Cell. January 28, 2005; 120 (2): 223-35.
	Can Shaker potassium channels be locked in the deactivated state?, Yang Y, Yan Y, Sigworth FJ., J Gen Physiol. August 1, 2004; 124 (2): 163-71.
	Classes and narrowing selectivity of olfactory receptor neurons of Xenopus laevis tadpoles., Manzini I, Schild D., J Gen Physiol. February 1, 2004; 123 (2): 99-107.
	Integrin-ECM interactions regulate cadherin-dependent cell adhesion and are required for convergent extension in Xenopus., Marsden M, DeSimone DW., Curr Biol. July 15, 2003; 13 (14): 1182-91.
	Spatial distribution and specification of mammalian replication origins during G1 phase., Li F, Chen J, Solessio E, Gilbert DM., J Cell Biol. April 28, 2003; 161 (2): 257-66.
	Identification of amino acid residues lining the pore of a gap junction channel., Skerrett IM, Aronowitz J, Shin JH, Cymes G, Kasperek E, Cao FL, Nicholson BJ., J Cell Biol. October 28, 2002; 159 (2): 349-60.
	Oligonucleotide trapping method for purification of transcription factors., Gadgil H, Jarrett HW., J Chromatogr A. August 9, 2002; 966 (1-2): 99-110.
	Calmodulin binds to inv protein: implication for the regulation of inv function., Yasuhiko Y, Imai F, Ookubo K, Takakuwa Y, Shiokawa K, Yokoyama T., Dev Growth Differ. December 1, 2001; 43 (6): 671-81.
	The replication timing program of the Chinese hamster beta-globin locus is established coincident with its repositioning near peripheral heterochromatin in early G1 phase., Li F, Chen J, Izumi M, Butler MC, Keezer SM, Gilbert DM., J Cell Biol. July 23, 2001; 154 (2): 283-92.
	Axon projections of reciprocal inhibitory interneurons in the spinal cord of young Xenopus tadpoles and implications for the pattern of inhibition during swimming and struggling., Yoshida M, Roberts A, Soffe SR., J Comp Neurol. November 2, 1998; 400 (4): 504-18.
	"Micronucleoli" in the Xenopus germinal vesicle., Wu Z, Gall JG., Chromosoma. June 1, 1997; 105 (7-8): 438-43.
	Rab7 regulates transport from early to late endocytic compartments in Xenopus oocytes., Mukhopadhyay A, Funato K, Stahl PD., J Biol Chem. May 16, 1997; 272 (20): 13055-9.
	The actin network in the ciliary stalk of photoreceptors functions in the generation of new outer segment discs., Hale IL, Fisher SK, Matsumoto B., J Comp Neurol. December 2, 1996; 376 (1): 128-42.
	Erratic deposition of agrin during the formation of Xenopus neuromuscular junctions in culture., Anderson MJ, Shi ZQ, Grawel R, Zackson SL., Dev Biol. July 1, 1995; 170 (1): 1-20.
	Marked effects of salt on estrogen receptor binding to DNA: biologically relevant discrimination between DNA sequences., Murdoch FE, Grunwald KA, Gorski J., Biochemistry. November 12, 1991; 30 (45): 10838-44.
	Evidence for direct estrogen regulation of the human gonadotropin-releasing hormone gene., Radovick S, Ticknor CM, Nakayama Y, Notides AC, Rahman A, Weintraub BD, Cutler GB, Wondisford FE., J Clin Invest. November 1, 1991; 88 (5): 1649-55.
	Changes in lectin-binding pattern in the digestive tract of Xenopus laevis during metamorphosis. II. Small intestine., Ishizuya-Oka A, Shimozawa A., J Morphol. July 1, 1990; 205 (1): 9-15.
	Changes in lectin-binding pattern in the digestive tract of Xenopus laevis during metamorphosis. I. Gastric region., Ishizuya-Oka A, Shimozawa A., J Morphol. July 1, 1990; 205 (1): 1-8.
	Comparative lectin-binding patterns in the epidermis and dermal glands of Bufo bufo (L.) and Xenopus laevis (Daudin)., Danguy A, Genten F., Biol Struct Morphog. January 1, 1989; 2 (3): 94-101.

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