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Summary Expression Phenotypes Gene Literature (2) GO Terms (27) Nucleotides (251) Proteins (72) Interactants (89) Wiki
XB-GENEPAGE-1004690

Show:     All X. tropicalis X. laevis

Nucleotide sequences for pdlim1 - All

RefSeq mRNAs(16)
Models - Gene (34)
Models - mRNA (40)
mRNAs (21)
ESTs (81)

RefSeq mRNAs (16)

Accession Version Protein Name Length Protein Species
NM_203599 NM_203599.1 PDZ and LIM domain protein 1 1354 bp NP_988930 X. tropicalis
XM_012966268 XM_012966268.3 PDZ and LIM domain protein 1 isoform X2 1510 bp XP_012821722 X. tropicalis
XM_018095313 XM_018095313.2 PDZ and LIM domain protein 1 isoform X1 1571 bp XP_017950802 X. tropicalis
XM_018095314 XM_018095314.2 PDZ and LIM domain protein 1 isoform X3 1850 bp XP_017950803 X. tropicalis
XM_031904919 XM_031904919.1 XP_031760779.1 PDZ and LIM domain protein 1 isoform X4 1657 bp XP_031760779 X. tropicalis
NM_001089208 NM_001089208.2 PDZ and LIM domain 1 L homeolog 1288 bp NP_001082677 X. laevis.L
XM_041568428 XM_041568428.1 XP_041424362.1 PDZ and LIM domain 1 L homeolog isoform X1 1637 bp XP_041424362 X. laevis.L
XM_041568429 XM_041568429.1 XP_041424363.1 PDZ and LIM domain 1 L homeolog isoform X2 1556 bp XP_041424363 X. laevis.L
XM_041568430 XM_041568430.1 XP_041424364.1 PDZ and LIM domain 1 L homeolog isoform X3 1394 bp XP_041424364 X. laevis.L
XM_041568431 XM_041568431.1 XP_041424365.1 PDZ and LIM domain 1 L homeolog isoform X4 1260 bp XP_041424365 X. laevis.L
NM_001088957 NM_001088957.1 PDZ and LIM domain 1 S homeolog 1262 bp NP_001082426 X. laevis.S
XM_041570431 XM_041570431.1 XP_041426365.1 PDZ and LIM domain 1 S homeolog isoform X1 1655 bp XP_041426365 X. laevis.S
XM_041570432 XM_041570432.1 XP_041426366.1 PDZ and LIM domain 1 S homeolog isoform X2 1585 bp XP_041426366 X. laevis.S
XM_041570433 XM_041570433.1 XP_041426367.1 PDZ and LIM domain 1 S homeolog isoform X3 1435 bp XP_041426367 X. laevis.S
XM_041570434 XM_041570434.1 XP_041426368.1 PDZ and LIM domain 1 S homeolog isoform X4 1319 bp XP_041426368 X. laevis.S
XM_041570435 XM_041570435.1 XP_041426369.1 PDZ and LIM domain 1 S homeolog isoform X5 1214 bp XP_041426369 X. laevis.S

Models - Gene (34)

Source Version Model Species
NCBI 10.1 XBXL10_1g32816 X. laevis.S
NCBI 10.1 XBXL10_1g30572 X. laevis.L
NCBI 10.0 XBXT10g019835 X. tropicalis
ENSEMBL 10.0 pdlim1 X. tropicalis
Xenbase 9.2 gene2460 X. laevis.S
Xenbase 9.2 gene15055 X. laevis.L
JGI 9.1 Xelaev18034803m.g X. laevis.L
JGI 9.1 Xelaev18004505m.g X. laevis.S
Xenbase 9.1 gene4576 X. tropicalis
ENSEMBL 9.1 pdlim1 X. tropicalis
JGI 8.0 Xetrov14029324m.g X. tropicalis
JGI 7.2 Xelaev16027227m.g X. laevis.L
JGI 7.1 Xetro.G00701 X. tropicalis
JGI 6.0 XeXenL6RMv10027280m.g X. laevis.L
JGI 6.0 XeXenL6RMv10013548m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000008826 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_244000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_244000046 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_244000047 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_244000017 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2440017 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2440047 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2440013 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440098 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440097 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440095 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2440032 X. tropicalis
JGI 4.1 gw1.244.98.1 X. tropicalis
JGI 4.1 gw1.244.97.1 X. tropicalis
JGI 4.1 gw1.244.95.1 X. tropicalis
JGI 4.1 e_gw1.244.98.1 X. tropicalis
JGI 4.1 e_gw1.244.97.1 X. tropicalis
JGI 4.1 e_gw1.244.95.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2440046 X. tropicalis

mRNAs based on gene models(40)

Source Version Model Species
NCBI 10.1 XBmRNA57565 X. laevis.L
NCBI 10.1 XBmRNA61962 X. laevis.S
ENSEMBL 10.0 ENSXETT00000110561 X. tropicalis
NCBI 10.0 mRNA097882 X. tropicalis
ENSEMBL 10.0 ENSXETT00000019398 X. tropicalis
ENSEMBL 10.0 ENSXETT00000110656 X. tropicalis
Xenbase 9.2 rna43927 X. laevis.L
Xenbase 9.2 rna7159 X. laevis.S
JGI 9.1 Xelaev18004505m X. laevis.S
Xenbase 9.1 rna14889 X. tropicalis
ENSEMBL 9.1 ENSXETT00000019398 X. tropicalis
JGI 9.1 Xelaev18034803m X. laevis.L
JGI 8.0 Xetrov14029324m X. tropicalis
JGI 7.2 Xelaev16027227m X. laevis.L
JGI 7.1 Xetro.G00701.5 X. tropicalis
JGI 7.1 Xetro.G00701.3 X. tropicalis
JGI 7.1 Xetro.G00701.1 X. tropicalis
JGI 7.1 Xetro.G00701.4 X. tropicalis
JGI 7.1 Xetro.G00701.2 X. tropicalis
JGI 6.0 XeXenL6RMv10027280m X. laevis.L
JGI 6.0 XeXenL6RMv10013548m X. laevis.L
JGI 4.1 gw1.244.95.1 X. tropicalis
JGI 4.1 e_gw1.244.97.1 X. tropicalis
JGI 4.1 e_gw1.244.98.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000019398 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2440013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2440046 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2440047 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2440017 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2440032 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440095 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440097 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440098 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_244000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_244000046 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_244000047 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_244000017 X. tropicalis
JGI 4.1 e_gw1.244.95.1 X. tropicalis
JGI 4.1 gw1.244.97.1 X. tropicalis
JGI 4.1 gw1.244.98.1 X. tropicalis

mRNAs from cDNA libraries (21)

Clone Accession Species Library Anatomy Stage
IMAGE:5385031 BC061431 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TGas002g22 CT025432 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_203599 X. tropicalis
XM_012966268 X. tropicalis
XM_018095313 X. tropicalis
XM_018095314 X. tropicalis
XM_031904919 X. tropicalis
IMAGE:6881050 BC054254 X. laevis.L NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
NM_001089208 X. laevis.L
XM_041568428 X. laevis.L
XM_041568429 X. laevis.L
XM_041568430 X. laevis.L
XM_041568431 X. laevis.L
IMAGE:4888880 BC041514 X. laevis.S NICHD_XGC_Emb2 whole organism NF stage 17 to NF stage 19
IMAGE:6948689 BC110941 X. laevis.S
NM_001088957 X. laevis.S
XM_041570431 X. laevis.S
XM_041570432 X. laevis.S
XM_041570433 X. laevis.S
XM_041570434 X. laevis.S
XM_041570435 X. laevis.S

ESTs (81)

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu069h23 BX683130 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:8867920 EL707645 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8907399 EL800754 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:8963045 EL659169 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8965505 EL659606 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8957464 EL661984 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8958555 EL663616 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:7531782 CX432447 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:5308220 BQ389833 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:5308025 BQ389918 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:5385031 BQ393048 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7027383 CF784275 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7027000 CF784906 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TGas002g22 AL595128 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas067k19 AL683425 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7539058 CX451872 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7543320 CX459201 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7536020 CX477521 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu020k03 AL637847 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu028f21 AL646639 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu069h23 AL778523 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu124m01 AL802399 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6995802 CF238950 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:6994899 CF239782 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:5379307 BQ522861 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:6980166 CF149674 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA009f18 CR417023 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA006a05 CR447904 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA054b04 BX720814 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7594751 CX331923 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7621749 CX342291 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7629523 CX368826 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7791329 DR906098 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:6984199 CF151828 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7708319 CX961800 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO12347 CX963195 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7804219 DR839056 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8950700 EG650814 5' X. tropicalis NICHD_XGC_tropInt_60 intestine frog
IMAGE:8953283 EG654622 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
IMAGE:8946902 EL657686 5' X. tropicalis NICHD_XGC_tropInt_54 intestine frog
xthr16K04 CN099570 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7594751 DR890801 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7543320 CX459200 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7621749 DR898879 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7536020 CX477520 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7629523 DR900780 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7531782 DR888656 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:5379307 BQ522860 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
CAAO12347 CX963194 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:5308220 BQ389832 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:8907399 EL800755 3' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:5308025 BQ389917 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TTbA006a05 CR447905 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
xthr16K04 CN099569 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7027383 CF784274 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TTpA054b04 BX720815 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7027000 CF784905 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TTbA050n14 CR423343 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7708319 CX961799 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7804219 DR839055 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8867920 EL707644 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:7539058 CX451871 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
XL006f06 BJ031174 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:8543992 EB474164 5' X. laevis.L NICHD_XGC_tail_m tail NF stage 56 to NF stage 62
IMAGE:8530411 EB476767 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8823500 EG575998 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8644729 EB738238 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
IMAGE:6875706 CB200591 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:6932498 CB945233 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
XL410f01ex BP672337 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk137i20ex DC047688 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk148n04ex DC051361 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:6877281 CB206104 5' X. laevis.L NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
IMAGE:6877512 CB206338 5' X. laevis.L NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
IMAGE:6881050 CB208257 5' X. laevis.L NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
xlk107k24ex DC038093 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk137i20ex DC014457 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:6875706 CB564776 3' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
XL006f06 BJ046116 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:6878720 CB560207 3' X. laevis.L NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
rxlk107k24ex DC005165 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5