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Summary Expression Phenotypes Gene Literature (2) GO Terms (27) Nucleotides (251) Proteins (72) Interactants (89) Wiki
XB-GENEPAGE-1004690

Show:     All X. tropicalis X. laevis

Nucleotide sequences for pdlim1 - Xenopus tropicalis

RefSeq mRNAs(5)
Models - Gene (25)
Models - mRNA (31)
mRNAs (7)
ESTs (62)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_203599 NM_203599.1 PDZ and LIM domain protein 1 1354 bp NP_988930 X. tropicalis
XM_012966268 XM_012966268.3 PDZ and LIM domain protein 1 isoform X2 1510 bp XP_012821722 X. tropicalis
XM_018095313 XM_018095313.2 PDZ and LIM domain protein 1 isoform X1 1571 bp XP_017950802 X. tropicalis
XM_018095314 XM_018095314.2 PDZ and LIM domain protein 1 isoform X3 1850 bp XP_017950803 X. tropicalis
XM_031904919 XM_031904919.1 XP_031760779.1 PDZ and LIM domain protein 1 isoform X4 1657 bp XP_031760779 X. tropicalis

Models - Gene (25)

Source Version Model Species
NCBI 10.0 XBXT10g019835 X. tropicalis
ENSEMBL 10.0 pdlim1 X. tropicalis
Xenbase 9.1 gene4576 X. tropicalis
ENSEMBL 9.1 pdlim1 X. tropicalis
JGI 8.0 Xetrov14029324m.g X. tropicalis
JGI 7.1 Xetro.G00701 X. tropicalis
ENSEMBL 4.1 ENSXETG00000008826 X. tropicalis
JGI 4.1 gw1.244.97.1 X. tropicalis
JGI 4.1 gw1.244.98.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2440032 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440095 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440097 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440098 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2440013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2440047 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2440017 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_244000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_244000046 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_244000047 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_244000017 X. tropicalis
JGI 4.1 gw1.244.95.1 X. tropicalis
JGI 4.1 e_gw1.244.98.1 X. tropicalis
JGI 4.1 e_gw1.244.97.1 X. tropicalis
JGI 4.1 e_gw1.244.95.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2440046 X. tropicalis

mRNAs based on gene models(31)

Source Version Model Species
ENSEMBL 10.0 ENSXETT00000110656 X. tropicalis
ENSEMBL 10.0 ENSXETT00000019398 X. tropicalis
ENSEMBL 10.0 ENSXETT00000110561 X. tropicalis
NCBI 10.0 mRNA097882 X. tropicalis
ENSEMBL 9.1 ENSXETT00000019398 X. tropicalis
Xenbase 9.1 rna14889 X. tropicalis
JGI 8.0 Xetrov14029324m X. tropicalis
JGI 7.1 Xetro.G00701.2 X. tropicalis
JGI 7.1 Xetro.G00701.3 X. tropicalis
JGI 7.1 Xetro.G00701.4 X. tropicalis
JGI 7.1 Xetro.G00701.5 X. tropicalis
JGI 7.1 Xetro.G00701.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_244000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_244000046 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_244000047 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_244000017 X. tropicalis
JGI 4.1 gw1.244.95.1 X. tropicalis
JGI 4.1 gw1.244.97.1 X. tropicalis
JGI 4.1 gw1.244.98.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440098 X. tropicalis
JGI 4.1 e_gw1.244.97.1 X. tropicalis
JGI 4.1 e_gw1.244.98.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000019398 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2440013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2440046 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2440047 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2440017 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2440032 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440095 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2440097 X. tropicalis
JGI 4.1 e_gw1.244.95.1 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
IMAGE:5385031 BC061431 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TGas002g22 CT025432 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_203599 X. tropicalis
XM_012966268 X. tropicalis
XM_018095313 X. tropicalis
XM_018095314 X. tropicalis
XM_031904919 X. tropicalis

ESTs (62)

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu069h23 BX683130 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:8867920 EL707645 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8907399 EL800754 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:8963045 EL659169 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8965505 EL659606 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8957464 EL661984 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8958555 EL663616 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:7027383 CF784275 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TNeu069h23 AL778523 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu124m01 AL802399 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6995802 CF238950 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:6994899 CF239782 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:5379307 BQ522861 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:6980166 CF149674 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA009f18 CR417023 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA006a05 CR447904 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA054b04 BX720814 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7594751 CX331923 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7621749 CX342291 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7629523 CX368826 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7791329 DR906098 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:6984199 CF151828 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7708319 CX961800 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO12347 CX963195 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7804219 DR839056 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8950700 EG650814 5' X. tropicalis NICHD_XGC_tropInt_60 intestine frog
IMAGE:8953283 EG654622 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
IMAGE:8946902 EL657686 5' X. tropicalis NICHD_XGC_tropInt_54 intestine frog
xthr16K04 CN099570 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:5308220 BQ389833 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:5308025 BQ389918 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:5385031 BQ393048 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7027000 CF784906 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TGas002g22 AL595128 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas067k19 AL683425 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7531782 CX432447 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7539058 CX451872 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7543320 CX459201 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7536020 CX477521 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu020k03 AL637847 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu028f21 AL646639 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5308220 BQ389832 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
CAAO12347 CX963194 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:5308025 BQ389917 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TTpA054b04 BX720815 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:8907399 EL800755 3' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:7027383 CF784274 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:8867920 EL707644 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:7027000 CF784905 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
xthr16K04 CN099569 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7708319 CX961799 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:5379307 BQ522860 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7804219 DR839055 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7539058 CX451871 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7594751 DR890801 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7543320 CX459200 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7621749 DR898879 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7536020 CX477520 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA050n14 CR423343 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7531782 DR888656 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7629523 DR900780 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTbA006a05 CR447905 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30