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Summary Expression Phenotypes Gene Literature (2) GO Terms (35) Nucleotides (187) Proteins (76) Interactants (129) Wiki
XB-GENEPAGE-1007163

Show:     All X. tropicalis X. laevis

Nucleotide sequences for usp16 - All

RefSeq mRNAs(13)
Models - Gene (37)
Models - mRNA (46)
mRNAs (16)
ESTs (47)

RefSeq mRNAs (13)

Accession Version Protein Name Length Protein Species
NM_001078690 NM_001078690.1 ubiquitin carboxyl-terminal hydrolase 16 3459 bp NP_001072158 X. tropicalis
XM_012956695 XM_012956695.3 ubiquitin carboxyl-terminal hydrolase 16 isoform X1 3484 bp XP_012812149 X. tropicalis
XM_012956696 XM_012956696.2 ubiquitin carboxyl-terminal hydrolase 16 isoform X1 3496 bp XP_012812150 X. tropicalis
XM_012956697 XM_012956697.3 ubiquitin carboxyl-terminal hydrolase 16 isoform X1 3535 bp XP_012812151 X. tropicalis
NM_001089775 NM_001089775.1 ubiquitin carboxyl-terminal hydrolase 16 3386 bp NP_001083244 X. laevis.L
XM_018244904 XM_018244904.2 ubiquitin carboxyl-terminal hydrolase 16 isoform X1 3389 bp XP_018100393 X. laevis.L
XM_018244905 XM_018244905.2 ubiquitin carboxyl-terminal hydrolase 16 isoform X1 3388 bp XP_018100394 X. laevis.L
XM_018244906 XM_018244906.2 ubiquitin carboxyl-terminal hydrolase 16 isoform X2 3386 bp XP_018100395 X. laevis.L
XM_018244907 XM_018244907.2 ubiquitin carboxyl-terminal hydrolase 16 isoform X3 3320 bp XP_018100396 X. laevis.L
XM_018248865 XM_018248865.2 ubiquitin carboxyl-terminal hydrolase 16-like isoform X1 3398 bp XP_018104354 X. laevis.S
XM_041583384 XM_041583384.1 XP_041439318.1 ubiquitin carboxyl-terminal hydrolase 16-like isoform X1 3442 bp XP_041439318 X. laevis.S
XM_041583386 XM_041583386.1 XP_041439320.1 ubiquitin carboxyl-terminal hydrolase 16-like isoform X1 3382 bp XP_041439320 X. laevis.S
XM_041583387 XM_041583387.1 XP_041439321.1 ubiquitin carboxyl-terminal hydrolase 16-like isoform X2 3396 bp XP_041439321 X. laevis.S

Models - Gene (37)

Source Version Model Species
NCBI 10.1 XBXL10_1g9109 X. laevis.S
NCBI 10.1 XBXL10_1g6299 X. laevis.L
NCBI 10.0 XBXT10g003144 X. tropicalis
ENSEMBL 10.0 usp16 X. tropicalis
Xenbase 9.2 gene3016 X. laevis.L
Xenbase 9.2 gene18653 X. laevis.S
JGI 9.1 Xelaev18011526m.g X. laevis.L
JGI 9.1 Xelaev18014276m.g X. laevis.S
Xenbase 9.1 gene30509 X. tropicalis
ENSEMBL 9.1 usp16 X. tropicalis
JGI 8.0 Xetrov14006454m.g X. tropicalis
JGI 7.2 Xelaev16067574m.g X. laevis.L
JGI 7.1 Xetro.B02159 X. tropicalis
JGI 6.0 XeXenL6RMv10045050m.g X. laevis.L
JGI 6.0 XeXenL6RMv10033529m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000020255 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_4510004 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4510012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4510005 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_451000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_451000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_451000012 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_451000005 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4510086 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4510064 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4510054 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4510053 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4510009 X. tropicalis
JGI 4.1 gw1.451.86.1 X. tropicalis
JGI 4.1 gw1.451.64.1 X. tropicalis
JGI 4.1 gw1.451.54.1 X. tropicalis
JGI 4.1 gw1.451.53.1 X. tropicalis
JGI 4.1 e_gw1.451.86.1 X. tropicalis
JGI 4.1 e_gw1.451.64.1 X. tropicalis
JGI 4.1 e_gw1.451.54.1 X. tropicalis
JGI 4.1 e_gw1.451.53.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4510011 X. tropicalis

mRNAs based on gene models(46)

Source Version Model Species
NCBI 10.1 XBmRNA11821 X. laevis.L
NCBI 10.1 XBmRNA16951 X. laevis.S
ENSEMBL 10.0 ENSXETT00000076666 X. tropicalis
ENSEMBL 10.0 ENSXETT00000069160 X. tropicalis
NCBI 10.0 mRNA015955 X. tropicalis
ENSEMBL 10.0 ENSXETT00000043701 X. tropicalis
ENSEMBL 10.0 ENSXETT00000071241 X. tropicalis
Xenbase 9.2 rna54452 X. laevis.S
Xenbase 9.2 rna8740 X. laevis.L
ENSEMBL 9.1 ENSXETT00000071241 X. tropicalis
ENSEMBL 9.1 ENSXETT00000043701 X. tropicalis
ENSEMBL 9.1 ENSXETT00000069160 X. tropicalis
ENSEMBL 9.1 ENSXETT00000076666 X. tropicalis
Xenbase 9.1 rna58385 X. tropicalis
JGI 9.1 Xelaev18011526m X. laevis.L
JGI 9.1 Xelaev18014276m X. laevis.S
JGI 8.0 Xetrov14006454m X. tropicalis
JGI 7.2 Xelaev16067574m X. laevis.L
JGI 7.1 Xetro.B02159.2 X. tropicalis
JGI 7.1 Xetro.B02159.3 X. tropicalis
JGI 7.1 Xetro.B02159.4 X. tropicalis
JGI 7.1 Xetro.B02159.1 X. tropicalis
JGI 6.0 XeXenL6RMv10045050m X. laevis.L
JGI 6.0 XeXenL6RMv10033529m X. laevis.L
JGI 4.1 fgenesh1_pg.C_scaffold_451000012 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_451000005 X. tropicalis
JGI 4.1 gw1.451.53.1 X. tropicalis
JGI 4.1 gw1.451.54.1 X. tropicalis
JGI 4.1 gw1.451.64.1 X. tropicalis
JGI 4.1 gw1.451.86.1 X. tropicalis
JGI 4.1 e_gw1.451.53.1 X. tropicalis
JGI 4.1 e_gw1.451.64.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000043701 X. tropicalis
JGI 4.1 e_gw1.451.86.1 X. tropicalis
JGI 4.1 e_gw1.451.54.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_4510004 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4510011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4510005 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4510012 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4510009 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4510053 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4510054 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4510064 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4510086 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_451000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_451000011 X. tropicalis

mRNAs from cDNA libraries (16)

Clone Accession Species Library Anatomy Stage
IMAGE:6990711 BC075532 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7692517 BC121230 X. tropicalis NIH_XGC_tropTe4 testis frog
NM_001078690 X. tropicalis
XM_012956695 X. tropicalis
XM_012956696 X. tropicalis
XM_012956697 X. tropicalis
IMAGE:4033277 BC060022 X. laevis.L
NM_001089775 X. laevis.L
XM_018244904 X. laevis.L
XM_018244905 X. laevis.L
XM_018244906 X. laevis.L
XM_018244907 X. laevis.L
XM_018248865 X. laevis.S
XM_041583384 X. laevis.S
XM_041583386 X. laevis.S
XM_041583387 X. laevis.S

ESTs (47)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7688364 CX911613 5' X. tropicalis NIH_XGC_tropTe4 testis frog
TTbA078b21 CR435104 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TNeu036n01 AL661567 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas100d13 AL956325 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas113n07 AL959034 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8889835 EL849004 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9008462 EL837639 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7575272 CX430039 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8947107 EL659361 5' X. tropicalis NICHD_XGC_tropInt_54 intestine frog
CAAO5130 CX936820 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO2497 CX932735 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7692651 CX918863 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:6990711 CF217280 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7692517 CX918226 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7690776 CX915979 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7690567 CX914801 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7689446 CX912885 5' X. tropicalis NIH_XGC_tropTe4 testis frog
CAAO2497 CX932734 3' X. tropicalis NIH_XGC_tropTe5 testis frog
TGas113n07 BX756518 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7575272 CX430038 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA078b21 CR435105 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7688364 CX911612 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7689446 CX912884 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7690567 CX914800 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7690776 CX915978 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7692517 CX918225 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7692651 CX918862 3' X. tropicalis NIH_XGC_tropTe4 testis frog
CAAO5130 CX936819 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:9008462 EL837640 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8889835 EL849005 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
xl339g10 DC134739 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL213h05 BJ626026 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
xlk69h01ex DC057233 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xl313f02 DC127029 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL095e14 BJ071726 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
xl228h08 DC102198 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL434b07ex BP680175 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:8320598 DY563390 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7979375 DR717710 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
rxl339g10 DC098643 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl313f02 DC091930 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl228h08 DC068128 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:3474927 BI347818 3' X. laevis.L Wellcome CRC pcDNAI St10 5 whole organism NF stage 10.5
rxlk69h01ex DC023813 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL095e14 BJ088838 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL434b07ex BP716893 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL213h05 BJ642421 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5