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Summary Expression Phenotypes Gene Literature (2) GO Terms (45) Nucleotides (194) Proteins (66) Interactants (231) Wiki
XB-GENEPAGE-1016981

Show:     All X. tropicalis X. laevis

Nucleotide sequences for rnf4 - All

RefSeq mRNAs(4)
Models - Gene (36)
Models - mRNA (43)
mRNAs (11)
ESTs (62)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001016554 NM_001016554.2 E3 ubiquitin-protein ligase RNF4 1063 bp NP_001016554 X. tropicalis
XM_012962491 XM_012962491.2 E3 ubiquitin-protein ligase RNF4 isoform X1 1289 bp XP_012817945 X. tropicalis
NM_001095517 NM_001095517.1 ring finger protein 4 L homeolog 1128 bp NP_001088986 X. laevis.L
NM_001095212 NM_001095212.1 ring finger protein 4 S homeolog 930 bp NP_001088681 X. laevis.S

Models - Gene (36)

Source Version Model Species
NCBI 10.1 XBXL10_1g3650 X. laevis.S
NCBI 10.1 XBXL10_1g618 X. laevis.L
NCBI 10.0 XBXT10g002225 X. tropicalis
ENSEMBL 10.0 rnf4 X. tropicalis
Xenbase 9.2 gene38490 X. laevis.L
Xenbase 9.2 gene11200 X. laevis.S
JGI 9.1 Xelaev18008881m.g X. laevis.S
JGI 9.1 Xelaev18005049m.g X. laevis.L
Xenbase 9.1 gene6142 X. tropicalis
ENSEMBL 9.1 rnf4 X. tropicalis
JGI 7.2 Xelaev16032923m.g X. laevis.S
JGI 7.2 Xelaev16045600m.g X. laevis.L
JGI 7.1 Xetro.A03238 X. tropicalis
JGI 6.0 XeXenL6RMv10021237m.g X. laevis.S
JGI 6.0 XeXenL6RMv10041524m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000025752 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6880003 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_688000002 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_688000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_688000003 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_6880001 X. tropicalis
JGI 4.1 e_gw1.688.21.1 X. tropicalis
JGI 4.1 e_gw1.688.25.1 X. tropicalis
JGI 4.1 e_gw1.688.47.1 X. tropicalis
JGI 4.1 e_gw1.688.51.1 X. tropicalis
JGI 4.1 e_gw1.688.7.1 X. tropicalis
JGI 4.1 gw1.688.21.1 X. tropicalis
JGI 4.1 gw1.688.25.1 X. tropicalis
JGI 4.1 gw1.688.47.1 X. tropicalis
JGI 4.1 gw1.688.51.1 X. tropicalis
JGI 4.1 gw1.688.7.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_6880002 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6880025 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6880047 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6880051 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_688000001 X. tropicalis

mRNAs based on gene models(43)

Source Version Model Species
NCBI 10.1 XBmRNA6655 X. laevis.S
NCBI 10.1 XBmRNA699 X. laevis.L
NCBI 10.0 mRNA011284 X. tropicalis
ENSEMBL 10.0 ENSXETT00000054670 X. tropicalis
ENSEMBL 10.0 ENSXETT00000060632 X. tropicalis
ENSEMBL 10.0 ENSXETT00000081815 X. tropicalis
ENSEMBL 10.0 ENSXETT00000120179 X. tropicalis
Xenbase 9.2 rna79648 X. laevis.L
Xenbase 9.2 rna32549 X. laevis.S
Xenbase 9.1 rna19825 X. tropicalis
JGI 9.1 Xelaev18008881m X. laevis.S
JGI 9.1 Xelaev18005049m X. laevis.L
ENSEMBL 9.1 ENSXETT00000093365 X. tropicalis
ENSEMBL 9.1 ENSXETT00000081815 X. tropicalis
ENSEMBL 9.1 ENSXETT00000060632 X. tropicalis
ENSEMBL 9.1 ENSXETT00000054670 X. tropicalis
JGI 7.2 Xelaev16032923m X. laevis.S
JGI 7.2 Xelaev16045600m X. laevis.L
JGI 7.1 Xetro.A03238.1 X. tropicalis
JGI 7.1 Xetro.A03238.2 X. tropicalis
JGI 6.0 XeXenL6RMv10021237m X. laevis.S
JGI 6.0 XeXenL6RMv10041524m X. laevis.L
JGI 4.1 e_gw1.688.51.1 X. tropicalis
JGI 4.1 e_gw1.688.47.1 X. tropicalis
JGI 4.1 e_gw1.688.25.1 X. tropicalis
JGI 4.1 e_gw1.688.21.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000054670 X. tropicalis
JGI 4.1 gw1.688.25.1 X. tropicalis
JGI 4.1 gw1.688.47.1 X. tropicalis
JGI 4.1 gw1.688.51.1 X. tropicalis
JGI 4.1 gw1.688.7.1 X. tropicalis
JGI 4.1 gw1.688.21.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_688000002 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_688000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_688000003 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_688000001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6880047 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6880051 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6880025 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_6880002 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6880003 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_6880001 X. tropicalis
JGI 4.1 e_gw1.688.7.1 X. tropicalis

mRNAs from cDNA libraries (11)

Clone Accession Species Library Anatomy Stage
IMAGE:7005231 BC075350 X. tropicalis
IMAGE:7692274 BC122893 X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7603842 BC135380 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7541845 BC157295 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TEgg003e24 CR760712 X. tropicalis
NM_001016554 X. tropicalis
XM_012962491 X. tropicalis
IMAGE:6871312 BC088973 X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
NM_001095517 X. laevis.L
IMAGE:7203249 BC087310 X. laevis.S
NM_001095212 X. laevis.S

ESTs (62)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7656108 CX827444 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7618676 CX345966 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8921797 EL835900 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8965592 EL662034 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:7664347 CX848589 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
TNeu134d22 AL787928 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7625638 CX378824 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7692274 CX918548 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:8913344 EL825252 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8913102 EL825235 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7668762 CX875133 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
TTbA039i11 CR441563 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA009m04 CR564925 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA073n11 BX734095 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7635367 CX339314 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas109b20 AL970549 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7603842 CX395497 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7541845 CX448308 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7652131 CX814660 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:8858156 EL821770 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
CABC9470 DR840699 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
TTpA073n11 BX734096 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7618676 CX345965 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7625638 CX378823 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7603842 DR893363 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7635367 DR902144 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7652131 CX814659 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7664347 CX848588 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7668762 CX875132 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7541845 CX448307 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8858156 EL821771 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8913344 EL825253 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8921797 EL835901 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
CABC9470 DR840698 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
TNeu134d22 BX699568 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7692274 CX918547 3' X. tropicalis NIH_XGC_tropTe4 testis frog
XL512k01ex BP704580 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:3377282 BE189720 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGp998F028378 BX849444 5' X. laevis.L Wellcome CRC pcDNAI egg egg unfertilized egg stage
IMAGp998P218088 BX851871 5' X. laevis.L Soares NXEG egg unfertilized egg stage
IMAGE:6326657 CA974157 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:6871312 CA983087 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:7298913 CO387107 5' X. laevis.S Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
XL194j12 BJ620786 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL201n15 BJ622665 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL208g22 BJ624418 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
xl248h03 DC108285 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl248j11 DC108330 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl230k24 DC102873 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:3199868 AW768008 5' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23
IMAGp998E217822 BX850346 5' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23
AW764557 AW764557 3' X. laevis.S Xenopus laevis tadpole stage 24 whole organism NF stage 24
IMAGE:3199868 AW766651 3' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23
XL512k01ex BP737373 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxl248j11 DC073825 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl248h03 DC073784 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl230k24 DC068776 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL208g22 BJ640955 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL201n15 BJ639343 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL194j12 BJ637493 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3302276 BF072243 3' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3377282 BE188754 3' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage