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Summary Expression Phenotypes Gene Literature (16) GO Terms (53) Nucleotides (394) Proteins (54) Interactants (195) Wiki
XB-GENEPAGE-862913

Show:     All X. tropicalis X. laevis

Nucleotide sequences for ctcf - Xenopus tropicalis

RefSeq mRNAs(1)
Models - Gene (20)
Models - mRNA (26)
mRNAs (3)
ESTs (180)

RefSeq mRNAs (1)

Accession Version Protein Name Length Protein Species
NM_001122796 NM_001122796.1 transcriptional repressor CTCF 2801 bp NP_001116268 X. tropicalis

Models - Gene (20)

Source Version Model Species
NCBI 10.0 XBXT10g011095 X. tropicalis
ENSEMBL 10.0 ctcf X. tropicalis
Xenbase 9.1 gene1344 X. tropicalis
ENSEMBL 9.1 ctcf X. tropicalis
JGI 8.0 Xetrov14018182m.g X. tropicalis
JGI 7.1 Xetro.D00537 X. tropicalis
ENSEMBL 4.1 ENSXETG00000015615 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1460042 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_146000007 X. tropicalis
JGI 4.1 e_gw1.146.5.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_146000042 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_146000043 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_146000013 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_146000007 X. tropicalis
JGI 4.1 gw1.146.127.1 X. tropicalis
JGI 4.1 gw1.146.129.1 X. tropicalis
JGI 4.1 gw1.146.5.1 X. tropicalis
JGI 4.1 e_gw1.146.127.1 X. tropicalis
JGI 4.1 e_gw1.146.129.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1460007 X. tropicalis

mRNAs based on gene models(26)

Source Version Model Species
ENSEMBL 10.0 ENSXETT00000060905 X. tropicalis
NCBI 10.0 mRNA055069 X. tropicalis
ENSEMBL 10.0 ENSXETT00000034066 X. tropicalis
ENSEMBL 9.1 ENSXETT00000072224 X. tropicalis
ENSEMBL 9.1 ENSXETT00000034066 X. tropicalis
Xenbase 9.1 rna4304 X. tropicalis
ENSEMBL 9.1 ENSXETT00000060905 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068097 X. tropicalis
ENSEMBL 9.1 ENSXETT00000070249 X. tropicalis
JGI 8.0 Xetrov14018182m X. tropicalis
JGI 7.1 Xetro.D00537.1 X. tropicalis
JGI 7.1 Xetro.D00537.2 X. tropicalis
JGI 4.1 gw1.146.129.1 X. tropicalis
JGI 4.1 gw1.146.5.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_146000007 X. tropicalis
JGI 4.1 e_gw1.146.129.1 X. tropicalis
JGI 4.1 e_gw1.146.5.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000034066 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1460007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1460042 X. tropicalis
JGI 4.1 e_gw1.146.127.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_146000042 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_146000043 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_146000013 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_146000007 X. tropicalis
JGI 4.1 gw1.146.127.1 X. tropicalis

mRNAs from cDNA libraries (3)

Clone Accession Species Library Anatomy Stage
IMAGE:7690853 BC161099 X. tropicalis NIH_XGC_tropTe4 testis frog
TTpA029a01 CU075811 X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
NM_001122796 X. tropicalis

ESTs (180)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu077m19 BX683361 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu067j01 BX683717 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas033o02 AL648824 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7571119 CX511524 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas032i02 AL648697 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7550659 CX509502 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas038h03 AL648217 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7567271 CX507707 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas037h14 AL647824 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7566747 CX506756 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas037o02 AL647777 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7557494 CX506327 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas047g02 AL646135 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7556654 CX505168 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas015j07 AL631272 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7546951 CX500178 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7553071 CX495534 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas017f16 AL629552 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7546061 CX488578 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas096i13 AL964188 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7549804 CX485388 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas142l16 AL963106 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7519784 CX480251 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7519785 CX479936 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas125g21 AL961766 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7564198 CX474698 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas099o02 AL961002 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7523305 CX473102 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas121j19 AL960940 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7563199 CX467750 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas136h14 AL972748 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7561684 CX465601 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas130e04 AL959243 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7561637 CX465272 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas138n13 AL957926 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7561727 CX465238 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas080i13 AL782628 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7541199 CX462701 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas072d24 AL775701 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7543422 CX458926 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542612 CX449954 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7541454 CX447914 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu116o10 AL801377 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7526825 CX443999 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7573592 CX440207 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu067j01 AL800727 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7573315 CX436748 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu143k03 AL796776 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7573153 CX436611 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu126l11 AL795552 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7575540 CX430550 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu114c04 AL787470 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7534773 CX429494 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu083m20 AL785347 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7534753 CX429354 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu065m13 AL783461 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7528288 CX425316 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7576940 CX422258 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu077m19 AL780025 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7578397 CX416264 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu079b15 AL776123 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7658622 CX837570 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
TNeu051m15 AL679734 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7690853 CX915496 5' X. tropicalis NIH_XGC_tropTe4 testis frog
TNeu057k13 AL677349 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
CAAO5464 CX937419 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO3780 CX934373 5' X. tropicalis NIH_XGC_tropTe5 testis frog
TNeu053f12 AL673056 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7751182 DN050672 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
TNeu050e12 AL661746 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st29p01 DC171663 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TNeu046p05 AL658920 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas079n04 AL774676 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8865378 EL702876 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
TTpA062d18 BX739149 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas061j18 AL680509 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA029a01 BX722988 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas064n22 AL679307 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas063n22 AL679128 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas006b06 AL674957 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTbA007i05 CR409181 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA036f22 CR582270 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA036c22 CR581113 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TGas034l02 AL654305 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA051l06 CR579724 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TGas039f01 AL653831 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA014m17 CR565147 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TGas040c23 AL653752 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas041c16 AL653464 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas029g01 AL652770 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7636314 CX406394 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7612663 CX404874 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7627018 CX381021 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7622229 CX342910 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas028j08 AL652534 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7595434 CX335854 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas046h23 AL652111 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
XZT10784 CX310638 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas043h05 AL651523 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12