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Summary Expression Phenotypes Gene Literature (0) GO Terms (10) Nucleotides (151) Proteins (54) Interactants (22) Wiki
XB-GENEPAGE-973292

Show:     All X. tropicalis X. laevis

Nucleotide sequences for trmt6 - All

RefSeq mRNAs(5)
Models - Gene (33)
Models - mRNA (36)
mRNAs (9)
ESTs (57)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_001005034 NM_001005034.1 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 1769 bp NP_001005034 X. tropicalis
NM_001096672 NM_001096672.1 tRNA methyltransferase 6 L homeolog 1725 bp NP_001090141 X. laevis.L
NM_001091997 NM_001091997.1 tRNA methyltransferase 6 S homeolog 1685 bp NP_001085466 X. laevis.S
XM_018264397 XM_018264397.2 tRNA methyltransferase 6 S homeolog isoform X1 1529 bp XP_018119886 X. laevis.S
XM_041563999 XM_041563999.1 XP_041419933.1 tRNA methyltransferase 6 S homeolog isoform X1 1915 bp XP_041419933 X. laevis.S

Models - Gene (33)

Source Version Model Species
NCBI 10.1 XBXL10_1g25067 X. laevis.S
NCBI 10.1 XBXL10_1g22509 X. laevis.L
NCBI 10.0 XBXT10g018487 X. tropicalis
ENSEMBL 10.0 trmt6 X. tropicalis
Xenbase 9.2 gene6928 X. laevis.S
Xenbase 9.2 gene6747 X. laevis.L
JGI 9.1 Xelaev18028809m.g X. laevis.S
JGI 9.1 Xelaev18026073m.g X. laevis.L
Xenbase 9.1 gene2078 X. tropicalis
ENSEMBL 9.1 trmt6 X. tropicalis
JGI 8.0 Xetrov14024303m.g X. tropicalis
JGI 7.1 Xetro.E01421 X. tropicalis
JGI 6.0 XeXenL6RMv10004137m.g X. laevis.L
JGI 6.0 XeXenL6RMv10024774m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000004501 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2480001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_248000003 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_248000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_248000002 X. tropicalis
JGI 4.1 e_gw1.248.114.1 X. tropicalis
JGI 4.1 e_gw1.248.93.1 X. tropicalis
JGI 4.1 e_gw1.248.94.1 X. tropicalis
JGI 4.1 gw1.248.114.1 X. tropicalis
JGI 4.1 gw1.248.93.1 X. tropicalis
JGI 4.1 gw1.248.94.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2480002 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2480093 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2480094 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2480114 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2480002 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2480003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2480002 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_248000001 X. tropicalis

mRNAs based on gene models(36)

Source Version Model Species
NCBI 10.1 XBmRNA46809 X. laevis.S
NCBI 10.1 XBmRNA41918 X. laevis.L
ENSEMBL 10.0 ENSXETT00000009779 X. tropicalis
NCBI 10.0 mRNA091290 X. tropicalis
Xenbase 9.2 rna20243 X. laevis.S
Xenbase 9.2 rna19742 X. laevis.L
Xenbase 9.1 rna6821 X. tropicalis
JGI 9.1 Xelaev18028809m X. laevis.S
JGI 9.1 Xelaev18026073m X. laevis.L
ENSEMBL 9.1 ENSXETT00000089583 X. tropicalis
ENSEMBL 9.1 ENSXETT00000066814 X. tropicalis
ENSEMBL 9.1 ENSXETT00000064800 X. tropicalis
ENSEMBL 9.1 ENSXETT00000009779 X. tropicalis
JGI 8.0 Xetrov14024303m X. tropicalis
JGI 7.1 Xetro.E01421.1 X. tropicalis
JGI 6.0 XeXenL6RMv10004137m X. laevis.L
JGI 6.0 XeXenL6RMv10024774m X. laevis.L
JGI 4.1 estExt_fgenesh1_pg.C_2480003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2480002 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2480001 X. tropicalis
JGI 4.1 e_gw1.248.94.1 X. tropicalis
JGI 4.1 e_gw1.248.93.1 X. tropicalis
JGI 4.1 e_gw1.248.114.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000009779 X. tropicalis
JGI 4.1 gw1.248.94.1 X. tropicalis
JGI 4.1 gw1.248.93.1 X. tropicalis
JGI 4.1 gw1.248.114.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_248000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_248000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_248000002 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_248000001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2480094 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2480114 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2480093 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2480002 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2480002 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
IMAGE:5383598 BC061359 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7002792 BC076885 X. tropicalis NICHD_XGC_Swb1 whole organism frog
NM_001005034 X. tropicalis
IMAGE:7981645 BC108582 X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
NM_001096672 X. laevis.L
IMAGE:4970180 BC072807 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001091997 X. laevis.S
XM_018264397 X. laevis.S
XM_041563999 X. laevis.S

ESTs (57)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7002792 CF374672 5' X. tropicalis NICHD_XGC_Swb1 whole organism frog
IMAGE:7629608 CX369631 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT13280 CX321526 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTbA032p21 CR433239 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:5383598 BQ396110 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7853787 DT394366 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7748669 DN045301 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
TGas011d07 AL630668 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas019p22 AL631038 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas028d15 AL652846 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas056f12 AL678198 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8888318 EL846922 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
st75i05 DC185351 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7542362 CX449562 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7669235 CX875432 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7570135 CX454424 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
xthr02H19 CN107057 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7539813 CX460786 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7570135 CX454423 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
rst75i05 DC155221 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TGas056f12 BX747240 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7542362 CX449561 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7539813 CX460785 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:5383598 BQ396109 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
TTbA032p21 CR433240 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
XZT13280 CX321525 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7669235 CX875431 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7748669 DN045300 3' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:7853787 DT394365 3' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
xthr02H19 CN107056 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8888318 EL846923 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7981903 DR719044 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7977319 DR723376 5' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:8318876 DY559990 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8321129 DY564290 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8318941 DY572432 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL169h11 BJ614802 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL075a16 BJ062110 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL453n16ex BP687308 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL451b06ex BP686373 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL415e04ex BP673932 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGp998M188088 BX854351 5' X. laevis.L Soares NXEG egg unfertilized egg stage
xlk7m22ex DC061218 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL046p19 BJ040602 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:7981645 DR722007 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7981645 DR721954 3' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL046o23 BJ054958 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3438096 BF232094 3' X. laevis.L Wellcome CRC pRN3 dorsal lip upper blastopore lip NF stage 10 to NF stage 12.5
IMAGE:3302201 BF072202 3' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL046p19 BJ054977 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL169h11 BJ631500 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL451b06ex BP722154 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:7981782 DR716178 3' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:4970180 CF289901 3' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL075a16 BJ080267 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxlk7m22ex DC027729 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:7981903 DR719125 3' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19