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Summary Expression Phenotypes Gene Literature (2) GO Terms (20) Nucleotides (201) Proteins (72) Interactants (118) Wiki
XB-GENEPAGE-998836

Show:     All X. tropicalis X. laevis

Nucleotide sequences for col6a3 - All

RefSeq mRNAs(17)
Models - Gene (36)
Models - mRNA (43)
mRNAs (18)
ESTs (69)

RefSeq mRNAs (17)

Accession Version Protein Name Length Protein Species
XM_002932021 XM_002932021.5 collagen alpha-3(VI) chain isoform X2 11066 bp XP_002932067 X. tropicalis
XM_031893669 XM_031893669.1 XP_031749529.1 collagen alpha-3(VI) chain isoform X1 11237 bp XP_031749529 X. tropicalis
XM_031893670 XM_031893670.1 XP_031749530.1 collagen alpha-3(VI) chain isoform X3 10646 bp XP_031749530 X. tropicalis
XM_031893671 XM_031893671.1 XP_031749531.1 collagen alpha-3(VI) chain isoform X4 10637 bp XP_031749531 X. tropicalis
XM_018236068 XM_018236068.2 collagen alpha-3(VI) chain isoform X3 11009 bp XP_018091557 X. laevis.L
XM_018236068 collagen alpha-3(VI) chain isoform X3 11009 bp XP_018091557 X. laevis.L
XM_041577019 XM_041577019.1 XP_041432953.1 collagen alpha-3(VI) chain isoform X1 11180 bp XP_041432953 X. laevis.L
XM_041577020 XM_041577020.1 XP_041432954.1 collagen alpha-3(VI) chain isoform X2 11177 bp XP_041432954 X. laevis.L
XM_041577021 XM_041577021.1 XP_041432955.1 collagen alpha-3(VI) chain isoform X4 10589 bp XP_041432955 X. laevis.L
XM_041577022 XM_041577022.1 XP_041432956.1 collagen alpha-3(VI) chain isoform X5 10580 bp XP_041432956 X. laevis.L
XM_041578643 XM_041578643.1 XP_041434577.1 collagen alpha-3(VI) chain isoform X1 12941 bp XP_041434577 X. laevis.S
XM_041578644 XM_041578644.1 XP_041434578.1 collagen alpha-3(VI) chain isoform X1 12848 bp XP_041434578 X. laevis.S
XM_041578645 XM_041578645.1 XP_041434579.1 collagen alpha-3(VI) chain isoform X2 12938 bp XP_041434579 X. laevis.S
XM_041578646 XM_041578646.1 XP_041434580.1 collagen alpha-3(VI) chain isoform X3 12769 bp XP_041434580 X. laevis.S
XM_041578648 XM_041578648.1 XP_041434582.1 collagen alpha-3(VI) chain isoform X4 12364 bp XP_041434582 X. laevis.S
XM_041578649 XM_041578649.1 XP_041434583.1 collagen alpha-3(VI) chain isoform X5 12349 bp XP_041434583 X. laevis.S
XM_041578650 XM_041578650.1 XP_041434584.1 collagen alpha-3(VI) chain isoform X6 12339 bp XP_041434584 X. laevis.S

Models - Gene (36)

Source Version Model Species
NCBI 10.1 XBXL10_1g43587 X. laevis.S
NCBI 10.1 XBXL10_1g40796 X. laevis.L
NCBI 10.0 XBXT10g009665 X. tropicalis
ENSEMBL 10.0 col6a3 X. tropicalis
JGI 9.1 Xelaev18047271m.g X. laevis.S
JGI 9.1 Xelaev18044825m.g X. laevis.L
Xenbase 9.1 gene26112 X. tropicalis
ENSEMBL 9.1 itch X. tropicalis
JGI 7.1 Xetro.I00876 X. tropicalis
JGI 6.0 XeXenL6RMv10037639m.g X. laevis.L
JGI 4.1 e_gw1.15.273.1 X. tropicalis
JGI 4.1 e_gw1.15.274.1 X. tropicalis
JGI 4.1 e_gw1.15.321.1 X. tropicalis
JGI 4.1 e_gw1.15.322.1 X. tropicalis
JGI 4.1 e_gw1.15.323.1 X. tropicalis
JGI 4.1 e_gw1.15.8.1 X. tropicalis
JGI 4.1 gw1.15.101.1 X. tropicalis
JGI 4.1 gw1.15.273.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_150048 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_150034 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150101 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150273 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150274 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150322 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150323 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_15000049 X. tropicalis
JGI 4.1 gw1.15.274.1 X. tropicalis
JGI 4.1 gw1.15.105.1 X. tropicalis
JGI 4.1 gw1.15.175.1 X. tropicalis
JGI 4.1 gw1.15.321.1 X. tropicalis
JGI 4.1 gw1.15.322.1 X. tropicalis
JGI 4.1 gw1.15.323.1 X. tropicalis
JGI 4.1 gw1.15.8.1 X. tropicalis
JGI 4.1 e_gw1.15.101.1 X. tropicalis
JGI 4.1 e_gw1.15.105.1 X. tropicalis
JGI 4.1 e_gw1.15.175.1 X. tropicalis

mRNAs based on gene models(43)

Source Version Model Species
NCBI 10.1 XBmRNA82040 X. laevis.S
NCBI 10.1 XBmRNA76865 X. laevis.L
ENSEMBL 10.0 ENSXETT00000074874 X. tropicalis
ENSEMBL 10.0 ENSXETT00000064472 X. tropicalis
ENSEMBL 10.0 ENSXETT00000076216 X. tropicalis
ENSEMBL 10.0 ENSXETT00000090836 X. tropicalis
NCBI 10.0 mRNA047711 X. tropicalis
JGI 9.1 Xelaev18047271m X. laevis.S
ENSEMBL 9.1 ENSXETT00000074874 X. tropicalis
ENSEMBL 9.1 ENSXETT00000076216 X. tropicalis
ENSEMBL 9.1 ENSXETT00000090836 X. tropicalis
Xenbase 9.1 rna51350 X. tropicalis
JGI 9.1 Xelaev18044825m X. laevis.L
ENSEMBL 9.1 ENSXETT00000064472 X. tropicalis
JGI 7.1 Xetro.I00876.2 X. tropicalis
JGI 7.1 Xetro.I00876.1 X. tropicalis
JGI 6.0 XeXenL6RMv10037639m X. laevis.L
JGI 4.1 gw1.15.101.1 X. tropicalis
JGI 4.1 e_gw1.15.101.1 X. tropicalis
JGI 4.1 gw1.15.175.1 X. tropicalis
JGI 4.1 gw1.15.273.1 X. tropicalis
JGI 4.1 gw1.15.274.1 X. tropicalis
JGI 4.1 gw1.15.321.1 X. tropicalis
JGI 4.1 gw1.15.322.1 X. tropicalis
JGI 4.1 gw1.15.323.1 X. tropicalis
JGI 4.1 gw1.15.8.1 X. tropicalis
JGI 4.1 gw1.15.105.1 X. tropicalis
JGI 4.1 e_gw1.15.105.1 X. tropicalis
JGI 4.1 e_gw1.15.175.1 X. tropicalis
JGI 4.1 e_gw1.15.273.1 X. tropicalis
JGI 4.1 e_gw1.15.274.1 X. tropicalis
JGI 4.1 e_gw1.15.321.1 X. tropicalis
JGI 4.1 e_gw1.15.322.1 X. tropicalis
JGI 4.1 e_gw1.15.323.1 X. tropicalis
JGI 4.1 e_gw1.15.8.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_150048 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_150034 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150101 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150273 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150274 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150322 X. tropicalis
JGI 4.1 estExt_Genewise1.C_150323 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_15000049 X. tropicalis

mRNAs from cDNA libraries (18)

Clone Accession Species Library Anatomy Stage
XM_002932021 X. tropicalis
XM_031893669 X. tropicalis
XM_031893670 X. tropicalis
XM_031893671 X. tropicalis
IM4-E3-71 AF170321 X. laevis.L
XM_018236068 X. laevis.L
XM_018236068 X. laevis.L
XM_041577019 X. laevis.L
XM_041577020 X. laevis.L
XM_041577021 X. laevis.L
XM_041577022 X. laevis.L
XM_041578643 X. laevis.S
XM_041578644 X. laevis.S
XM_041578645 X. laevis.S
XM_041578646 X. laevis.S
XM_041578648 X. laevis.S
XM_041578649 X. laevis.S
XM_041578650 X. laevis.S

ESTs (69)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8869769 EL710682 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:7610126 CX377003 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7609593 CX410604 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8868641 EL708644 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8869994 EL711249 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8958948 EL653922 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8960480 EL654636 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8940103 EL644125 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8937700 EL640893 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8937915 EL640473 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8941101 EL631556 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:7757477 DR875506 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7708052 CX961594 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO3042 CX933722 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:8853015 EL825136 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8924171 EL669089 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8956317 EL657943 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
TGas137n06 AL964397 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTbA005n06 CR417615 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:8863053 EL705633 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
THdA015c04 CR565691 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8869317 EL709386 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
THdA051j18 CR579715 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8872197 EL699239 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
TTpA049o01 BX730599 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7640311 CX315099 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7594502 CX331564 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7791935 CX340288 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7757477 DR875505 3' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:8863053 EL705632 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8868641 EL708643 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8869317 EL709385 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8869769 EL710681 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8869994 EL711248 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
TTbA005n06 CR417616 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA015c04 CR565692 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA051j18 CR579716 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7610126 CX377002 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7594502 DR890774 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7609593 DR895026 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7640311 DR903960 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7791935 DR906344 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
CAAO3042 CX933721 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:8872197 EL699238 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8937915 EL640472 3' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8937700 EL640892 3' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8940103 EL644124 3' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8853015 EL825137 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:6935397 CB942573 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:8640705 EB728212 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
IMAGE:8531287 EB465469 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:6881176 CB208361 5' X. laevis.L NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
IMAGE:8641507 EB732745 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
IMAGE:8545798 EB471106 5' X. laevis.L NICHD_XGC_tail_m tail NF stage 56 to NF stage 62
IMAGE:6873574 CB198590 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:6875665 CB200552 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:6933539 CB944344 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:8532255 EB480204 5' X. laevis.L NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
IMAGE:8535565 EB476053 5' X. laevis.L NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
XL068k23 BJ062661 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:8532401 EB475956 5' X. laevis.L NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
XL052c22 BJ069230 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:8533082 EB463874 5' X. laevis.L NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
IMAGE:8533082 EC276572 3' X. laevis.L NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
XL096c23 BJ089074 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:6875665 CB562983 3' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:8641507 EB731356 3' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
XL052c22 BJ086151 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:6873574 CB564887 3' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62