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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
nodal3.1	xenopus		embryo [+] pronephric nephrostome,pronephric duct,animal blastomere,animal hemisphere,germ plasm,vegetal blastomere,vegetal hemisphere,pronephric nephron,late proximal tubule,early distal tubule,early proximal tubule,late distal tubule,glomus,pronephric sinus,pronephric kidney,primary germ layer,blastomere,embryonic structure,podocyte,early embryonic cell,animal pole,pronephric tubule,vegetal pole,glomeral nexus,proximal tubule,distal tubule,proximal tubule branch,coelom,glomerular mesangial cell,glomerular epithelial cell,germinal granule,prime meridian,Roux spot,fasciculated network of fibrils,germinal vesicle,mitochondrial cloud,oocyte cortex,ooplasm,ring structure,subcortical cytoplasm,vegetal cortex,wedge region,yolk platelet,anatomical group,anatomical region,anatomical space,animal blastomere,blastomere D1,blastomere D1.1,blastomere D1.1.1,blastomere D1.1.2,blastomere D1.2,blastomere D1.2.1,blastomere D1.2.2,blastomere D2,blastomere D2.1,blastomere D2.1.1,blastomere D2.1.2,blastomere D2.2,blastomere D2.2.1,blastomere D2.2.2,blastomere V1,blastomere V1.1,blastomere V1.1.1,blastomere V1.1.2,blastomere V1.2,blastomere V1.2.1,blastomere V1.2.2,blastomere V2,blastomere V2.1,blastomere V2.1.1,blastomere V2.1.2,blastomere V2.2,blastomere V2.2.1,blastomere V2.2.2,egg,embryonic structure,glomeral nexus,mesonephric duct,multicellular anatomical structure,oocyte,polar body,primary oogonium,primary spermatogonium,primordial germ cell,process,secondary oogonium,secondary spermatogonium,spermatid,spermatocyte,spermatozoon,vegetal blastomere

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Expression summary for nodal3.1

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Experiment	Species	Images	Stages	Anatomy	Assay
Khokha MK et al. (2005) Assay Paper	tropicalis	2 images	NF stage 8 to NF stage 11	dorsal marginal zone, embryo, involuted dorsal mesoderm, upper blastopore lip	in situ hybridization
Fletcher RB and Harland RM (2008) Assay Paper	laevis	1 image	NF stage 10	dorsal marginal zone, upper blastopore lip	in situ hybridization
Hikasa H and Sokol SY (2004) Assay Paper	xenopus	1 image	NF stage 10.5	dorsal marginal zone	in situ hybridization
Sasai N et al. (2008) Assay Paper	laevis	1 image	NF stage 10.5	ectoderm	in situ hybridization
Freeman SD et al. (2008) Assay Paper	laevis	1 image	NF stage 10	dorsal marginal zone, upper blastopore lip	in situ hybridization
Cuykendall TN and Houston DW (2009) Assay Paper	laevis	2 images	NF stage 9 to NF stage 10.5	dorsal marginal zone, vegetal blastomere	in situ hybridization
Distinct PAR-1 proteins function in different branches of Wnt signaling during vertebrate development. Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone	in situ hybridization
Distinct PAR-1 proteins function in different branches of Wnt signaling during vertebrate development. Paper	laevis	1 image	NF stage 10.5 to NF stage 11	dorsal marginal zone	in situ hybridization
Hex acts with beta-catenin to regulate anteroposterior patterning via a Groucho-related co-repressor and Nodal. Paper	laevis	1 image	NF stage 10.5	involuted dorsal mesoderm	in situ hybridization
Lefty-dependent inhibition of Nodal- and Wnt-responsive organizer gene expression is essential for normal gastrulation. Paper	xenopus	1 image	NF stage 10.25 to NF stage 10.5	upper blastopore lip	in situ hybridization
A gene regulatory network controlling hhex transcription in the anterior endoderm of the organizer. Paper	laevis	1 image	NF stage 10.5	endoderm	in situ hybridization
HEB and E2A function as SMAD/FOXH1 cofactors. Paper	xenopus	1 image	NF stage 9	dorsal marginal zone, upper blastopore lip	in situ hybridization
Lef1 plays a role in patterning the mesoderm and ectoderm in Xenopus tropicalis. Paper	tropicalis	1 image	NF stage 10.5	dorsal marginal zone, upper blastopore lip	in situ hybridization
The dual regulator Sufu integrates Hedgehog and Wnt signals in the early Xenopus embryo. Paper	laevis	1 image	NF stage 10	dorsal marginal zone	in situ hybridization
The involvement of Frodo in TCF-dependent signaling and neural tissue development. Xenbase Image	laevis	1 image	NF stage 10.5	dorsal marginal zone, upper blastopore lip	in situ hybridization
Tiki1 is required for head formation via Wnt cleavage-oxidation and inactivation. Paper	laevis	1 image	NF stage 10.5 to NF stage 11	dorsal marginal zone, involuting marginal zone	in situ hybridization
Xenbase User Curated Experiment	laevis	1 image	NF stage 9	dorsal marginal zone	in situ hybridization
The Toll/IL-1 receptor binding protein MyD88 is required for Xenopus axis formation. Paper	laevis	1 image	NF stage 10.5	axial mesoderm, involuting marginal zone	in situ hybridization
Serotonin signaling is required for Wnt-dependent GRP specification and leftward flow in Xenopus. Paper	laevis	1 image	NF stage 9	dorsal marginal zone	in situ hybridization
Maternal xNorrin, a canonical Wnt signaling agonist and TGF-β antagonist, controls early neuroectoderm specification in Xeno... Paper	laevis	1 image	NF stage 9 to NF stage 10	dorsal marginal zone	in situ hybridization
A tight control over Wnt action. Paper	laevis	1 image	NF stage 9	dorsal marginal zone	in situ hybridization
NEDD4L regulates convergent extension movements in Xenopus embryos via Disheveled-mediated non-canonical Wnt signaling. Paper	laevis	1 image	NF stage 10.5	upper blastopore lip	in situ hybridization
Xenopus tropicalis nodal-related gene 3 regulates BMP signaling: an essential role for the pro-region. Paper	laevis	1 image	NF stage 9 to NF stage 11	dorsal marginal zone, mesoderm, upper blastopore lip	in situ hybridization
Sulf1 has ligand-dependent effects on canonical and non-canonical Wnt signalling. Paper	laevis	1 image	NF stage 10	dorsal marginal zone, upper blastopore lip	in situ hybridization
Komiya Y et al. (2014) Assay Paper	laevis	1 image	NF stage 10.5	dorsal involuting marginal zone, dorsal marginal zone, involuted dorsal mesoderm, involuting marginal zone, upper blastopore lip	in situ hybridization
Liao G et al. (2006) Assay Paper	laevis	1 image	NF stage 10 to NF stage 10.5	dorsal marginal zone, upper blastopore lip	in situ hybridization
Kdm2a/b Lysine Demethylases Regulate Canonical Wnt Signaling by Modulating the Stability of Nuclear β-Catenin. Paper	laevis	2 images	NF stage 10.5	endomesoderm, involuted dorsal mesoderm, mesoderm	in situ hybridization
Nicetto D et al. (2013) Assay Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone	in situ hybridization
Acosta H et al. (2015) Assay Paper	laevis	1 image	NF stage 10.5	endomesoderm, involuted dorsal mesoderm, involuting marginal zone, mesoderm	in situ hybridization
NF2/Merlin is required for the axial pattern formation in the Xenopus laevis embryo. Paper	laevis	1 image	NF stage 10.5	endomesoderm, involuted dorsal mesoderm, mesoderm, upper blastopore lip	in situ hybridization
Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing. Paper	tropicalis	1 image	NF stage 10.5	upper blastopore lip	in situ hybridization
Zhang X et al. (2015) Assay Paper	laevis	1 image	NF stage 11	upper blastopore lip	in situ hybridization
Nodal signaling in Xenopus gastrulae is cell-autonomous and patterned by beta-catenin. Paper	laevis	1 image	NF stage 11	upper blastopore lip	in situ hybridization
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula trans... Paper	laevis	1 image	NF stage 9	dorsal marginal zone	in situ hybridization
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula trans... Paper	laevis	1 image	NF stage 11	dorsal marginal zone	in situ hybridization
Kulkarni SS and Khokha MK (2018) Assay Paper	tropicalis	1 image	NF stage 10 to NF stage 11	dorsal marginal zone, upper blastopore lip	in situ hybridization
Candidate Heterotaxy Gene FGFR4 Is Essential for Patterning of the Left-Right Organizer in Xenopus. Paper	tropicalis	1 image	NF stage 10	mesoderm	in situ hybridization
Vick P et al. (2018) Assay Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone, upper blastopore lip	in situ hybridization
Mukherjee S et al. (2020) Assay Paper	tropicalis	1 image	NF stage 10.5	dorsal endoderm, involuting marginal zone epithelial layer, upper blastopore lip	in situ hybridization
TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis. Paper	laevis	1 image	NF stage 10.5 to NF stage 11	dorsal marginal zone, upper blastopore lip	in situ hybridization
Sempou E et al. (2022) Assay Paper	tropicalis	1 image	NF stage 10	dorsal marginal zone, mesoderm	in situ hybridization
Rab7 is required for mesoderm patterning and gastrulation in Xenopus. Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone	in situ hybridization
Blumberg_Cho dorsal blastopore lip Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 7 to NF stage 9	upper blastopore lip	cDNA Library
Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library Unigene laevis cDNA library	laevis		NF stage 12.5	endomesoderm	cDNA Library

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