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GEO Series: GSE76059

Title: ChIP-sequencing in stage 10.5 Xenopus laevis embryos

Summary

Epigenomic profiling (H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II) of Xenopus laevis stage 10.5 embryos.


Contributors: Simon van Heeringen, Simon van Heeringen, Sarita Paranjpe, Gert-Jan Veenstra

Experiment Type: ChIP-seq of H3K4me1, H3K4me3, H3K36me3, p300 and RNA Polymerase II in duplicate. BAM processed data files (a format not accepted by GEO) were generated for H3K4me1, H3K36me3, RNAPII samples.

Article: XB-ART-52612, PubMed

Source: NCBI GEO, Xenbase FTP

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
input WE - NF10.5 GSM1973501  ChIP-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5  
   H3K36me3 WE - NF10.5 GSM1973497  GSM1973498  ChIP-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5 H3f3a Ab30
   H3K4me1 WE - NF10.5 GSM1973493  GSM1973494  ChIP-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5 methyl-H3f3a Ab13
   H3K4me3 WE - NF10.5 GSM1973491  GSM1973492  ChIP-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5 Tri-Methyl H3f3a Ab19
   Pol II WE - NF10.5 GSM1973499  GSM1973500  ChIP-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5 polr2a Ab8
   ep300 WE - NF10.5 GSM1973495  GSM1973496  ChIP-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5 ep300 Ab1
Select All DEG      Select All 
Xtr   
Xla 

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