Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.
Return to search results

GEO Series: GSE81458

Title: Regional expression of X. tropicalis transcription factors in early gastrula embryos

Summary

Purpose: We wished to obtain spatial expression profiles of transcription factor gene expression and expression of other genes. Methods: Embryos were dissected and RNA-seq was performed to determine expression levels of genes. Comparisons between explanted regions permits determination of spatial enrichment of gene expression.


Contributors: Kitt Paraiso, Ira Blitz, Kitt Paraiso

Experiment Type: mRNA-seq performed on 5 dissected regions of NF stage 10.5 X. tropicalis embryos and stage-matched sibling whole embryos. Experiment performed in duplicate.

Article: XB-ART-52307, PubMed

Source: NCBI GEO, Xenbase FTP

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
WE - NF10-10.25 GSM2152758  GSM2152759  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10 to NF stage 10.25  
   animal cap - NF10-10.25 DEG GSM2152748  GSM2152749  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
animal cap NF stage 10 to NF stage 10.25  
   dorsal marginal zone - NF10-10.25 DEG GSM2152750  GSM2152751  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
dorsal marginal zone NF stage 10 to NF stage 10.25  
   lateral marginal zone - NF10-10.25 DEG GSM2152752  GSM2152753  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
lateral NF stage 10 to NF stage 10.25  
marginal zone NF stage 10 to NF stage 10.25  
   vegetal yolk mass - NF10-10.25 DEG GSM2152754  GSM2152755  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
vegetal yolk mass NF stage 10 to NF stage 10.25  
   ventral marginal zone - NF10-10.25 DEG GSM2152756  GSM2152757  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
ventral marginal zone NF stage 10 to NF stage 10.25  
Select All DEG      Select All 
Xtr   
Xla 

Return to search results