Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
JBrowse2 Tracks
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
Summary
Attributions
Wiki
XB-GRNA-25900340
gRNA Name:
tyr gRNA17
Synonyms:
Genomic Target:
tyr
Sequence:
5' GGAACTGGCCCCTGCAAACA 3'
Genomic Target
tropicalis
Identities
20/20
genome
gRNA
5' TGTTTGCAGGGGCCAGTTCC 3' |||||||||||||||||||| 3' ACAAACGTCCCCGGTCAAGG 5'
Genomic Alignments
Position
Identity
Strand
Genomic Target
laevis 10.1
Chr3S:95419121..95419140
19/20
Antisense
off-target
avpr1a.S
Chr2S:101811710..101811729
19/20
Sense
off-target
LOC108709705
Chr2L:114949530..114949549
18/20
Sense
off-target
LOC108708403
Chr3L:21738454..21738473
18/20
Sense
off-target
LOC108710791
Chr1L:175047078..175047097
17/20
Sense
off-target
pitpnm2.L
Chr2S:75767547..75767566
17/20
Sense
off-target
LOC108709572
Chr3L:60829312..60829331
16/20
Antisense
off-target
lrriq1.L
Chr4L:17878723..17878742
16/20
Antisense
off-target
ppp6r3.L
Chr8L:42622601..42622620
16/20
Antisense
off-target
tmem164.L
Chr8L:42622731..42622750
16/20
Antisense
off-target
tmem164.L
Chr1L:165572194..165572213
16/20
Sense
off-target
LOC108716031
Chr8S:61961231..61961250
16/20
Antisense
off-target
LOC121393116
Chr1S:134396959..134396978
18/20
unknown
Chr5S:55838640..55838659
18/20
unknown
Chr6L:163023792..163023811
17/20
unknown
Chr2L:41149533..41149552
16/20
unknown
Chr2L:80906478..80906497
16/20
unknown
Chr4L:34180188..34180207
16/20
unknown
Chr5L:128821274..128821293
16/20
unknown
Chr7L:65528737..65528756
16/20
unknown
Chr8L:83037923..83037942
16/20
unknown
Chr8S:41211802..41211821
16/20
unknown
View All (22)
tropicalis 10.0
Chr2:167828576..167828595
20/20
Antisense
tyr
Chr7:55867486..55867505
17/20
Sense
med19
Chr9:20372014..20372033
17/20
Antisense
coro7
Chr2:120122016..120122035
16/20
Antisense
itgbl1
Chr3:102834554..102834573
18/20
Chr1:162125243..162125262
17/20
Chr10:20548110..20548129
17/20
Chr5:110714442..110714461
17/20
View All (8)
Publications
???morpholino.displaySummary.papersFirst???
Identification and validation of candidate risk genes in endocytic vesicular trafficking associated with esophageal atresia and tracheoesophageal fistulas.
,
HGG Adv 2022
???morpholino.displaySummary.papersRecent???
???morpholino.displaySummary.papersAll???