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Summary Expression Phenotypes Gene Literature (184) GO Terms (46) Nucleotides (147) Proteins (50) Interactants (1210) Wiki
XB-GENEPAGE-487288

Show:     All X. tropicalis X. laevis

Nucleotide sequences for foxd3 - All

RefSeq mRNAs(3)
Models - Gene (34)
Models - mRNA (34)
mRNAs (13)
ESTs (63)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001011383 NM_001011383.1 forkhead box protein D3 1721 bp NP_001011383 X. tropicalis
NM_001085557 NM_001085557.1 forkhead box protein D3-A 1746 bp NP_001079026 X. laevis.L
NM_001085609 NM_001085609.1 forkhead box protein D3-B 1756 bp NP_001079078 X. laevis.S

Models - Gene (34)

Source Version Model Species
NCBI 10.1 XBXL10_1g21573 X. laevis.S
NCBI 10.1 XBXL10_1g19078 X. laevis.L
NCBI 10.0 XBXT10g008041 X. tropicalis
ENSEMBL 10.0 ENSXETG00000010836 X. tropicalis
Xenbase 9.2 gene41506 X. laevis.S
Xenbase 9.2 gene43111 X. laevis.L
JGI 9.1 Xelaev18025134m.g X. laevis.S
JGI 9.1 Xelaev18022999m.g X. laevis.L
Xenbase 9.1 gene16597 X. tropicalis
ENSEMBL 9.1 ENSXETG00000010836 X. tropicalis
JGI 7.2 Xelaev16016101m.g X. laevis.L
JGI 7.1 Xetro.D01825 X. tropicalis
JGI 6.0 XeXenL6RMv10049641m.g X. laevis.L
JGI 6.0 XeXenL6RMv10047976m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000010836 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_4000031 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40248 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_4000136 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_4000039 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_4000135 X. tropicalis
JGI 4.1 e_gw1.4.126.1 X. tropicalis
JGI 4.1 e_gw1.4.247.1 X. tropicalis
JGI 4.1 e_gw1.4.248.1 X. tropicalis
JGI 4.1 gw1.4.126.1 X. tropicalis
JGI 4.1 gw1.4.247.1 X. tropicalis
JGI 4.1 gw1.4.248.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_40064 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40126 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40247 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_40030 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_40133 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_40134 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_40038 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_4000021 X. tropicalis

mRNAs based on gene models(34)

Source Version Model Species
NCBI 10.1 XBmRNA35221 X. laevis.L
NCBI 10.1 XBmRNA39980 X. laevis.S
NCBI 10.0 mRNA039933 X. tropicalis
ENSEMBL 10.0 ENSXETT00000023699 X. tropicalis
Xenbase 9.2 rna83973 X. laevis.S
Xenbase 9.2 rna86344 X. laevis.L
JGI 9.1 Xelaev18025134m X. laevis.S
ENSEMBL 9.1 ENSXETT00000023699 X. tropicalis
Xenbase 9.1 rna36325 X. tropicalis
JGI 9.1 Xelaev18022999m X. laevis.L
JGI 7.2 Xelaev16016101m X. laevis.L
JGI 7.1 Xetro.D01825.1 X. tropicalis
JGI 6.0 XeXenL6RMv10049641m X. laevis.L
JGI 6.0 XeXenL6RMv10047976m X. laevis.L
JGI 4.1 fgenesh1_pg.C_scaffold_4000136 X. tropicalis
JGI 4.1 e_gw1.4.126.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_4000021 X. tropicalis
JGI 4.1 gw1.4.126.1 X. tropicalis
JGI 4.1 gw1.4.247.1 X. tropicalis
JGI 4.1 gw1.4.248.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_4000039 X. tropicalis
JGI 4.1 e_gw1.4.247.1 X. tropicalis
JGI 4.1 e_gw1.4.248.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000023699 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_40030 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_40133 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_40134 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_40038 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_40064 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40126 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40247 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40248 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_4000031 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_4000135 X. tropicalis

mRNAs from cDNA libraries (13)

Clone Accession Species Library Anatomy Stage
foxd3-HAR216 BC088566 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6988210 BC088566 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
foxd3-HAR216 BC088566 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6988210 BC088566 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TNeu088c09 CR760163 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001011383 X. tropicalis
AB014611 X. laevis.L
IMAGE:8321039 BC123272 X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
NM_001085557 X. laevis.L
AJ298866 X. laevis.S
IMAGE:5156275 BC072772 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
AGL_20F01 DQ096918 X. laevis.S
NM_001085609 X. laevis.S

ESTs (63)

Clone Accession 5'/3' Species Library Anatomy Stage
st39n22 DC176665 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7515359 CX745699 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
TTbA069f07 CR437138 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA069c06 CR436853 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
st40n22 DC176938 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st54h12 DC180087 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TNeu088c09 AL804354 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu090j14 AL800816 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu107f01 AL793370 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu135n05 AL789088 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu104g04 AL788603 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu099h16 AL787012 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
foxd3-HAR83 AL649197 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7577898 CX424216 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
st30o23 DC172237 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7546400 CX499659 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7756428 DR873807 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7666908 CX853689 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7613536 CX389443 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTpA007g23 BX708459 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
foxd3-HAR216 CF220512 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
st31o23 DC172508 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7512671 CX741297 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7613536 CX389442 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst30o23 DC141936 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst31o23 DC142227 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst39n22 DC146367 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst40n22 DC146638 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst54h12 DC149799 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7577898 CX424215 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7546400 CX499658 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7512671 CX741296 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7515359 CX745698 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7511813 CX740522 3' X. tropicalis NIH_XGC_tropGas5 whole organism NF stage 10 to NF stage 18
IMAGE:7511812 CX740590 3' X. tropicalis NIH_XGC_tropGas5 whole organism NF stage 10 to NF stage 18
TNeu107f01 BX689754 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu088c09 BX690080 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu104g04 BX691717 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu099h16 BX692148 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu090j14 BX695333 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA069c06 CR436854 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA069f07 CR437139 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA007g23 BX708460 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7666908 CX853688 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7756428 DR873806 3' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
xlk103b21ex DC036616 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:5156275 CA792974 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:8321039 DY565788 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8322118 DY545075 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7982800 DR723446 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7975733 DR721368 5' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:7980757 DR719380 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
xlk157i22ex DC063302 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8533074 EB465605 5' X. laevis.S NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
IMAGE:8318096 DY573193 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7979206 DR725359 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8318381 DY557742 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
rxlk103b21ex DC003753 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:7975733 DR721360 3' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
rxl331c06 DC096431 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:8533074 EC277218 3' X. laevis.S NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
rxl262g18 DC077696 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxlk157i22ex DC029808 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5