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Summary Expression Phenotypes Gene Literature (12) GO Terms (11) Nucleotides (137) Proteins (61) Interactants (153) Wiki
XB-GENEPAGE-1007356

Show:     All X. tropicalis X. laevis

Nucleotide sequences for pcdh7 - All

RefSeq mRNAs(12)
Models - Gene (29)
Models - mRNA (35)
mRNAs (16)
ESTs (31)

RefSeq mRNAs (12)

Accession Version Protein Name Length Protein Species
NM_001134820 NM_001134820.4 protocadherin-7 precursor 7922 bp NP_001128292 X. tropicalis
XM_012965366 XM_012965366.3 protocadherin-7 isoform X3 5142 bp XP_012820820 X. tropicalis
XM_018093920 XM_018093920.2 protocadherin-7 isoform X1 7719 bp XP_017949409 X. tropicalis
XM_031901728 XM_031901728.1 XP_031757588.1 protocadherin-7 isoform X2 7695 bp XP_031757588 X. tropicalis
NM_001172191 NM_001172191.1 protocadherin 7 L homeolog precursor 4445 bp NP_001165662 X. laevis.L
XM_041584090 XM_041584090.1 XP_041440024.1 protocadherin 7 L homeolog isoform X1 12363 bp XP_041440024 X. laevis.L
XM_041584114 XM_041584114.1 XP_041440048.1 protocadherin 7 L homeolog isoform X2 12337 bp XP_041440048 X. laevis.L
XM_041584145 XM_041584145.1 XP_041440079.1 protocadherin 7 L homeolog isoform X3 6363 bp XP_041440079 X. laevis.L
XM_041584200 XM_041584200.1 XP_041440134.1 protocadherin 7 L homeolog isoform X4 8468 bp XP_041440134 X. laevis.L
XM_041579414 XM_041579414.1 XP_041435348.1 protocadherin-7 isoform X1 7043 bp XP_041435348 X. laevis.S
XM_041579415 XM_041579415.1 XP_041435349.1 protocadherin-7 isoform X2 4372 bp XP_041435349 X. laevis.S
XM_041579416 XM_041579416.1 XP_041435350.1 protocadherin-7 isoform X3 4434 bp XP_041435350 X. laevis.S

Models - Gene (29)

Source Version Model Species
NCBI 10.1 XBXL10_1g3742 X. laevis.S
NCBI 10.1 XBXL10_1g744 X. laevis.L
NCBI 10.0 XBXT10g016025 X. tropicalis
ENSEMBL 10.0 pcdh7 X. tropicalis
Xenbase 9.2 gene2494 X. laevis.L
Xenbase 9.2 gene42799 X. laevis.S
JGI 9.1 Xelaev18005193m.g X. laevis.L
JGI 9.1 Xelaev18008979m.g X. laevis.S
Xenbase 9.1 gene7228 X. tropicalis
ENSEMBL 9.1 pcdh7 X. tropicalis
JGI 8.0 Xetrov14005259m.g X. tropicalis
JGI 7.2 Xelaev16017183m.g X. laevis.L
JGI 7.1 Xetro.A03124 X. tropicalis
JGI 6.0 XeXenL6RMv10014053m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000022281 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_472000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_472000006 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4720001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4720023 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4720022 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4720021 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4720001 X. tropicalis
JGI 4.1 gw1.472.23.1 X. tropicalis
JGI 4.1 gw1.472.22.1 X. tropicalis
JGI 4.1 gw1.472.21.1 X. tropicalis
JGI 4.1 e_gw1.472.23.1 X. tropicalis
JGI 4.1 e_gw1.472.22.1 X. tropicalis
JGI 4.1 e_gw1.472.21.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4720006 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.1 XBmRNA6807 X. laevis.S
NCBI 10.1 XBmRNA1001 X. laevis.L
ENSEMBL 10.0 ENSXETT00000048276 X. tropicalis
ENSEMBL 10.0 ENSXETT00000081203 X. tropicalis
NCBI 10.0 mRNA079278 X. tropicalis
ENSEMBL 10.0 ENSXETT00000082239 X. tropicalis
Xenbase 9.2 rna7262 X. laevis.L
Xenbase 9.2 rna85855 X. laevis.S
Xenbase 9.1 rna23357 X. tropicalis
JGI 9.1 Xelaev18008979m X. laevis.S
JGI 9.1 Xelaev18005193m X. laevis.L
ENSEMBL 9.1 ENSXETT00000082239 X. tropicalis
ENSEMBL 9.1 ENSXETT00000081203 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071851 X. tropicalis
ENSEMBL 9.1 ENSXETT00000048276 X. tropicalis
JGI 8.0 Xetrov14005259m X. tropicalis
JGI 7.2 Xelaev16017183m X. laevis.L
JGI 7.1 Xetro.A03124.2 X. tropicalis
JGI 7.1 Xetro.A03124.1 X. tropicalis
JGI 6.0 XeXenL6RMv10014053m X. laevis.L
ENSEMBL 4.1 ENSXETT00000048276 X. tropicalis
JGI 4.1 gw1.472.21.1 X. tropicalis
JGI 4.1 gw1.472.22.1 X. tropicalis
JGI 4.1 gw1.472.23.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_472000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_472000006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4720023 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4720022 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4720021 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_4720001 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4720001 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4720006 X. tropicalis
JGI 4.1 e_gw1.472.23.1 X. tropicalis
JGI 4.1 e_gw1.472.22.1 X. tropicalis
JGI 4.1 e_gw1.472.21.1 X. tropicalis

mRNAs from cDNA libraries (16)

Clone Accession Species Library Anatomy Stage
IMAGE:7652856 BC135972 X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:8920652 BC168528 X. tropicalis NICHD_XGC_tropTe1 testis frog
NM_001134820 X. tropicalis
XM_012965366 X. tropicalis
XM_018093920 X. tropicalis
XM_031901728 X. tropicalis
AF043643 X. laevis.L
IMAGE:4958923 BC077259 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001172191 X. laevis.L
XM_041584090 X. laevis.L
XM_041584114 X. laevis.L
XM_041584145 X. laevis.L
XM_041584200 X. laevis.L
XM_041579414 X. laevis.S
XM_041579415 X. laevis.S
XM_041579416 X. laevis.S

ESTs (31)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas103n04 AL961063 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7650778 CX812225 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
TNeu135n06 AL798963 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st97b22 DC192016 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:9015355 EL861942 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:5309253 BQ392433 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
st4e22 DC174227 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8920652 EL834841 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
TGas039n22 AL651320 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7652856 CX821097 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7673522 CX883261 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7553732 CX492395 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu075o14 AL781595 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7652856 CX821096 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7650778 CX812224 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7673522 CX883260 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:5309253 BQ392432 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TGas103n04 BX754570 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7553732 CX492394 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8920652 EL834842 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8318992 DY568517 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7976096 DR717160 5' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:7982725 DR725721 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8317426 DY558599 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:4958923 BM179635 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGp998C2010927 BX843172 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL096d23 BJ072019 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:3399164 BE505744 3' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
IMAGE:7976096 DR717220 3' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
XL096d23 BJ089090 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:4958923 BI478096 3' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32