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Summary Expression Phenotypes Gene Literature (191) GO Terms (118) Nucleotides (156) Proteins (71) Interactants (1308) Wiki
XB-GENEPAGE-12531593

Show:     All X. tropicalis X. laevis

Nucleotide sequences for cdh1 - All

RefSeq mRNAs(4)
Models - Gene (33)
Models - mRNA (52)
mRNAs (10)
ESTs (48)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
XM_002935997 XM_002935997.5 cadherin-1 3377 bp XP_002936043 X. tropicalis
NM_001172232 NM_001172232.1 cadherin-1 precursor 2619 bp NP_001165703 X. laevis.S
XM_018259321 XM_018259321.2 cadherin-1 isoform X1 4070 bp XP_018114810 X. laevis.S
XM_018257950 XM_018257950.2 cadherin-1-like 3449 bp XP_018113439 X. laevis.L

Models - Gene (33)

Source Version Model Species
NCBI 10.1 XBXL10_1g18757 X. laevis.L
NCBI 10.1 XBXL10_1g21312 X. laevis.S
NCBI 10.0 XBXT10g019520 X. tropicalis
ENSEMBL 10.0 cdh1 X. tropicalis
Xenbase 9.2 gene13365 X. laevis.L
Xenbase 9.2 gene35243 X. laevis.S
JGI 9.1 Xelaev18022637m.g X. laevis.L
JGI 9.1 Xelaev18024918m.g X. laevis.S
Xenbase 9.1 gene22638 X. tropicalis
ENSEMBL 9.1 cdh3 X. tropicalis
JGI 8.0 Xetrov14018703m.g X. tropicalis
JGI 7.2 Xelaev16063495m.g X. laevis.S
JGI 7.1 Xetro.D00899 X. tropicalis
JGI 6.0 XeXenL6RMv10016914m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000016379 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_181000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_181000032 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_181000011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1810011 X. tropicalis
JGI 4.1 e_gw1.181.80.1 X. tropicalis
JGI 4.1 e_gw1.181.81.1 X. tropicalis
JGI 4.1 e_gw1.181.82.1 X. tropicalis
JGI 4.1 gw1.181.80.1 X. tropicalis
JGI 4.1 gw1.181.81.1 X. tropicalis
JGI 4.1 gw1.181.82.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1810012 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1810080 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1810081 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1810082 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1810003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1810031 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1810032 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_181000031 X. tropicalis

mRNAs based on gene models(52)

Source Version Model Species
NCBI 10.1 XBmRNA34589 X. laevis.L
NCBI 10.1 XBmRNA39443 X. laevis.S
ENSEMBL 10.0 ENSXETT00000104687 X. tropicalis
ENSEMBL 10.0 ENSXETT00000035752 X. tropicalis
ENSEMBL 10.0 ENSXETT00000035760 X. tropicalis
ENSEMBL 10.0 ENSXETT00000065320 X. tropicalis
NCBI 10.0 mRNA096405 X. tropicalis
ENSEMBL 10.0 ENSXETT00000077787 X. tropicalis
ENSEMBL 10.0 ENSXETT00000083120 X. tropicalis
ENSEMBL 10.0 ENSXETT00000094885 X. tropicalis
ENSEMBL 10.0 ENSXETT00000095339 X. tropicalis
ENSEMBL 10.0 ENSXETT00000095982 X. tropicalis
Xenbase 9.2 rna38882 X. laevis.L
Xenbase 9.2 rna75108 X. laevis.S
Xenbase 9.1 rna45738 X. tropicalis
JGI 9.1 Xelaev18022637m X. laevis.L
JGI 9.1 Xelaev18024918m X. laevis.S
ENSEMBL 9.1 ENSXETT00000105076 X. tropicalis
ENSEMBL 9.1 ENSXETT00000104687 X. tropicalis
ENSEMBL 9.1 ENSXETT00000102938 X. tropicalis
ENSEMBL 9.1 ENSXETT00000098010 X. tropicalis
ENSEMBL 9.1 ENSXETT00000095339 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094885 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087182 X. tropicalis
ENSEMBL 9.1 ENSXETT00000083120 X. tropicalis
ENSEMBL 9.1 ENSXETT00000074991 X. tropicalis
ENSEMBL 9.1 ENSXETT00000035760 X. tropicalis
JGI 8.0 Xetrov14018703m X. tropicalis
JGI 7.2 Xelaev16063495m X. laevis.S
JGI 7.1 Xetro.D00899.3 X. tropicalis
JGI 7.1 Xetro.D00899.1 X. tropicalis
JGI 7.1 Xetro.D00899.2 X. tropicalis
JGI 6.0 XeXenL6RMv10016914m X. laevis.S
JGI 4.1 fgenesh1_pg.C_scaffold_181000031 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_181000032 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_181000011 X. tropicalis
JGI 4.1 gw1.181.80.1 X. tropicalis
JGI 4.1 gw1.181.81.1 X. tropicalis
JGI 4.1 gw1.181.82.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1810082 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1810081 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1810080 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_181000003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1810011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1810032 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1810031 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1810003 X. tropicalis
JGI 4.1 e_gw1.181.82.1 X. tropicalis
JGI 4.1 e_gw1.181.81.1 X. tropicalis
JGI 4.1 e_gw1.181.80.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000035755 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1810012 X. tropicalis

mRNAs from cDNA libraries (10)

Clone Accession Species Library Anatomy Stage
IMAGE:7871306 BC154859 X. tropicalis
THdA025n18 CU025182 X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
XM_002935997 X. tropicalis
IMAGE:7871589 BC121645 X. tropicalis
XM_018259321 X. laevis.S
L29057 X. laevis.S
XM_018257950 X. laevis.L
NM_001172232 X. laevis.S
U04708 X. laevis.S
X75454 X. laevis.S

ESTs (48)

Clone Accession 5'/3' Species Library Anatomy Stage
TTbA041l02 CR440633 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:8965936 EL656368 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8957480 EL657213 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8958137 EL657946 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8966593 EL662616 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8953040 EG652613 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
IMAGE:6981346 CF226831 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TGas063n05 AL675287 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu035h08 AL657481 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu021m08 AL636347 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
XL461c24ex BP690329 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL517m12ex BP706433 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:8536492 EB483438 5' X. laevis.S NICHD_XGC_olfb brain unspecified stage
IMAGE:8642237 EB732439 5' X. laevis.S NICHD_XGC_skin_m skin unspecified stage
IMAGE:8644672 EB737169 5' X. laevis.S NICHD_XGC_skin_m skin unspecified stage
IMAGE:8640472 EB737289 5' X. laevis.S NICHD_XGC_skin_m skin unspecified stage
PBX0147B02 AW645024 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
xl254g09 DC110093 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl333h06 DC133102 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL414h08ex BP673666 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL445k04ex BP684327 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL423d20ex BP689046 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGp998H147823 BX855000 5' X. laevis.S Harland stage 19-23 whole organism NF stage 19 to NF stage 23
IMAGE:5536575 CF288572 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:4970072 CF290060 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:6879492 CB180714 5' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
IMAGE:8529520 EB471125 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8528913 EB482790 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8821002 EG566885 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8820711 EG572634 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
XL058k04 BJ058215 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL061l20 BJ059170 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL096b05 BJ071966 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
xlk146n09ex DC050713 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:7977917 DR720817 5' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:8321404 DY574022 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:3200317 AW768095 5' X. laevis.S Harland stage 19-23 whole organism NF stage 19 to NF stage 23
rxlk146n09ex DC017389 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL096b05 BJ089042 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL445k04ex BP720282 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL423d20ex BP714108 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:7976266 DR718016 3' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:4970072 CF290061 3' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL058k04 BJ076747 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:6879492 CB560643 3' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
IMAGE:8820711 EG584610 3' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
rxl333h06 DC097092 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:8640472 EB738222 3' X. laevis.S NICHD_XGC_skin_m skin unspecified stage