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Summary Expression Phenotypes Gene Literature (33) GO Terms (109) Nucleotides (135) Proteins (53) Interactants (619) Wiki
XB-GENEPAGE-479054

Show:     All X. tropicalis X. laevis

Nucleotide sequences for foxc1 - All

RefSeq mRNAs(3)
Models - Gene (35)
Models - mRNA (35)
mRNAs (12)
ESTs (39)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001007863 NM_001007863.1 forkhead box protein C1 2466 bp NP_001007864 X. tropicalis
NM_001096377 NM_001096377.1 forkhead box protein C1-B 2378 bp NP_001089846 X. laevis.L
NM_001088214 NM_001088214.2 forkhead box protein C1-A 2389 bp NP_001081683 X. laevis.S

Models - Gene (35)

Source Version Model Species
NCBI 10.1 XBXL10_1g29275 X. laevis.S
NCBI 10.1 XBXL10_1g27564 X. laevis.L
NCBI 10.0 XBXT10g000966 X. tropicalis
ENSEMBL 10.0 foxc1 X. tropicalis
Xenbase 9.2 gene14754 X. laevis.L
Xenbase 9.2 gene1734 X. laevis.S
JGI 9.1 Xelaev18031569m.g X. laevis.L
JGI 9.1 Xelaev18033436m.g X. laevis.S
Xenbase 9.1 gene5797 X. tropicalis
ENSEMBL 9.1 foxc1 X. tropicalis
JGI 7.2 Xelaev16037616m.g X. laevis.S
JGI 7.2 Xelaev16008007m.g X. laevis.L
JGI 7.1 Xetro.F00849 X. tropicalis
JGI 6.0 XeXenL6RMv10023038m.g X. laevis.S
JGI 6.0 XeXenL6RMv10010768m.g X. laevis.L
JGI 6.0 XeXenL6RMv10010768m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000000594 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_95000063 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_95000016 X. tropicalis
JGI 4.1 e_gw1.95.153.1 X. tropicalis
JGI 4.1 e_gw1.95.154.1 X. tropicalis
JGI 4.1 e_gw1.95.155.1 X. tropicalis
JGI 4.1 gw1.95.153.1 X. tropicalis
JGI 4.1 gw1.95.154.1 X. tropicalis
JGI 4.1 gw1.95.155.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_950036 X. tropicalis
JGI 4.1 estExt_Genewise1.C_950153 X. tropicalis
JGI 4.1 estExt_Genewise1.C_950154 X. tropicalis
JGI 4.1 estExt_Genewise1.C_950155 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_950016 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_950060 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_950061 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_950019 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_95000006 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_95000062 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.1 XBmRNA51711 X. laevis.L
NCBI 10.1 XBmRNA55012 X. laevis.S
NCBI 10.0 mRNA004854 X. tropicalis
ENSEMBL 10.0 ENSXETT00000001313 X. tropicalis
Xenbase 9.2 rna5042 X. laevis.S
Xenbase 9.2 rna43015 X. laevis.L
ENSEMBL 9.1 ENSXETT00000001313 X. tropicalis
Xenbase 9.1 rna18746 X. tropicalis
JGI 9.1 Xelaev18031569m X. laevis.L
JGI 9.1 Xelaev18033436m X. laevis.S
JGI 7.2 Xelaev16008007m X. laevis.L
JGI 7.2 Xelaev16037616m X. laevis.S
JGI 7.1 Xetro.F00849.1 X. tropicalis
JGI 6.0 XeXenL6RMv10023038m X. laevis.S
JGI 6.0 XeXenL6RMv10010768m X. laevis.S
JGI 6.0 XeXenL6RMv10010768m X. laevis.L
JGI 4.1 gw1.95.153.1 X. tropicalis
JGI 4.1 gw1.95.154.1 X. tropicalis
JGI 4.1 gw1.95.155.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_95000006 X. tropicalis
JGI 4.1 e_gw1.95.154.1 X. tropicalis
JGI 4.1 e_gw1.95.155.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000001313 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_950016 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_950060 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_950061 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_950019 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_950036 X. tropicalis
JGI 4.1 estExt_Genewise1.C_950153 X. tropicalis
JGI 4.1 estExt_Genewise1.C_950154 X. tropicalis
JGI 4.1 estExt_Genewise1.C_950155 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_95000016 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_95000062 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_95000063 X. tropicalis
JGI 4.1 e_gw1.95.153.1 X. tropicalis

mRNAs from cDNA libraries (12)

Clone Accession Species Library Anatomy Stage
IMAGE:6987041 BC079966 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TGas132n18 CR761442 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_001007863 X. tropicalis
foxc1-854 BC108535 X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
NM_001096377 X. laevis.L
AF116844 X. laevis.S
AJ242675 X. laevis.S
IMAGE:9041365 BC169731 X. laevis.S
IMAGE:9041367 BC169733 X. laevis.S
IMAGE:9093580 BC170199 X. laevis.S
IMAGE:9093582 BC170201 X. laevis.S
NM_001088214 X. laevis.S

ESTs (39)

Clone Accession 5'/3' Species Library Anatomy Stage
TTbA036i06 CR447609 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas008d06 AL628341 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas013i02 AL632223 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
L1G8d08 AL637443 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas060a15 AL681688 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas132n18 AL967482 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7551032 CX510377 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7639707 CX385380 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu023f09 AL641857 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu032e05 AL655746 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu074f21 AL781975 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5382584 BQ394117 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7785832 CX316946 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st1m09 DC168745 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st25h21 DC170373 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st59k09 DC181329 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st83l02 DC187394 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st103c08 DC191294 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:6987041 CF221513 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7029831 CF781570 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7785832 CX316945 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst25h21 DC140208 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7639707 CX385379 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst83l02 DC157269 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:5382584 BQ394116 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
TTbA036i06 CR447610 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas060a15 BX747661 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas132n18 BX758165 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7551032 CX510376 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
rst103c08 DC161324 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TNeu074f21 BX688166 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6635698 BU909967 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
xlk102k02ex DC036461 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
p5h7 AU244756 5' X. laevis.S Shibata Xenopus AEM lambda-ZAP II cDNA library endomesoderm NF stage 12.5 to NF stage 13
foxc1-854 DR714817 5' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
XL084h17 BJ065892 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL093l08 BJ088665 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL084h17 BJ083216 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxlk102k02ex DC003600 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5