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Summary Expression Phenotypes Gene Literature (40) GO Terms (46) Nucleotides (123) Proteins (49) Interactants (804) Wiki
XB-GENEPAGE-480736

Show:     All X. tropicalis X. laevis

Nucleotide sequences for hoxa1 - All

RefSeq mRNAs(3)
Models - Gene (33)
Models - mRNA (33)
mRNAs (7)
ESTs (38)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001008016 NM_001008016.1 homeobox protein Hox-A1 1868 bp NP_001008017 X. tropicalis
NM_001085719 NM_001085719.1 homeobox A1 L homeolog 1554 bp NP_001079188 X. laevis.L
XM_018269236 XM_018269236.2 homeobox protein Hox-A1 1861 bp XP_018124725 X. laevis.S

Models - Gene (33)

Source Version Model Species
NCBI 10.1 XBXL10_1g28961 X. laevis.S
NCBI 10.1 XBXL10_1g27088 X. laevis.L
NCBI 10.0 XBXT10g012466 X. tropicalis
ENSEMBL 10.0 hoxa1 X. tropicalis
Xenbase 9.2 gene9302 X. laevis.L
Xenbase 9.2 gene15285 X. laevis.S
JGI 9.1 Xelaev18033067m.g X. laevis.S
JGI 9.1 Xelaev18030982m.g X. laevis.L
Xenbase 9.1 gene6895 X. tropicalis
ENSEMBL 9.1 hoxa1 X. tropicalis
JGI 7.2 Xelaev16021622m.g X. laevis.L
JGI 7.2 Xelaev16080921m.g X. laevis.S
JGI 7.1 Xetro.F01340 X. tropicalis
JGI 6.0 XeXenL6RMv10034994m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000000715 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_56000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_56000049 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_56000016 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_56000048 X. tropicalis
JGI 4.1 e_gw1.56.178.1 X. tropicalis
JGI 4.1 e_gw1.56.179.1 X. tropicalis
JGI 4.1 e_gw1.56.185.1 X. tropicalis
JGI 4.1 gw1.56.178.1 X. tropicalis
JGI 4.1 gw1.56.179.1 X. tropicalis
JGI 4.1 gw1.56.185.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_560028 X. tropicalis
JGI 4.1 estExt_Genewise1.C_560178 X. tropicalis
JGI 4.1 estExt_Genewise1.C_560179 X. tropicalis
JGI 4.1 estExt_Genewise1.C_560185 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_560011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_560048 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_560049 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_560016 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.1 XBmRNA50736 X. laevis.L
NCBI 10.1 XBmRNA54489 X. laevis.S
NCBI 10.0 mRNA061761 X. tropicalis
ENSEMBL 10.0 ENSXETT00000001600 X. tropicalis
Xenbase 9.2 rna44611 X. laevis.S
Xenbase 9.2 rna27021 X. laevis.L
ENSEMBL 9.1 ENSXETT00000001600 X. tropicalis
Xenbase 9.1 rna22243 X. tropicalis
JGI 9.1 Xelaev18030982m X. laevis.L
JGI 9.1 Xelaev18033067m X. laevis.S
JGI 7.2 Xelaev16021622m X. laevis.L
JGI 7.2 Xelaev16080921m X. laevis.S
JGI 7.1 Xetro.F01340.1 X. tropicalis
JGI 6.0 XeXenL6RMv10034994m X. laevis.L
JGI 4.1 e_gw1.56.178.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_56000016 X. tropicalis
JGI 4.1 gw1.56.178.1 X. tropicalis
JGI 4.1 gw1.56.179.1 X. tropicalis
JGI 4.1 gw1.56.185.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_56000049 X. tropicalis
JGI 4.1 e_gw1.56.179.1 X. tropicalis
JGI 4.1 e_gw1.56.185.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000001600 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_560011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_560048 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_560049 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_560016 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_560028 X. tropicalis
JGI 4.1 estExt_Genewise1.C_560178 X. tropicalis
JGI 4.1 estExt_Genewise1.C_560179 X. tropicalis
JGI 4.1 estExt_Genewise1.C_560185 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_56000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_56000048 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
IMAGE:6977173 BC080895 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
NM_001008016 X. tropicalis
IMAGE:5536792 BC044984 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001085719 X. laevis.L
L25856 X. laevis.S
X62053 X. laevis.S
XM_018269236 X. laevis.S

ESTs (38)

Clone Accession 5'/3' Species Library Anatomy Stage
TTbA042h22 CR440895 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA040m06 CR575744 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
st27j03 DC170970 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TNeu008a03 AL635328 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu003f14 AL637071 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu028f22 AL650594 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu054c07 AL678686 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu094e01 AL791196 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5382131 BQ393267 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
xtbs23C24 CN083867 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:6977173 CF223903 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA013f15 CR410058 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7026366 CF783913 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7521340 CX469842 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:9017009 EL864244 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
st26j03 DC170679 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
THdA040m06 CR575745 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:6977173 CF223902 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7521340 CX469841 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
rst26j03 DC140513 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
xtbs23C24 CN083866 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:9017009 EL864245 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
TTbA042h22 CR440896 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7026366 CF783912 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TNeu054c07 BX685083 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5382131 BQ393266 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7981766 DR720375 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
xl221m21 DC100146 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl340c24 DC134963 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:8321989 DY556320 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:5536792 BQ730693 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGp998A1712227 BX852910 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5513877 CF286664 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL095h23 BJ071789 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxl340c24 DC098849 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl221m21 DC082266 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL095h23 BJ088899 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:7981766 DR720411 3' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19