Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (20) GO Terms (70) Nucleotides (8279) Proteins (73) Interactants (576) Wiki
XB-GENEPAGE-480745

Show:     All X. tropicalis X. laevis

Nucleotide sequences for ybx1 - All

RefSeq mRNAs(5)
Models - Gene (37)
Models - mRNA (47)
mRNAs (16)
ESTs (7235)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_001016677 NM_001016677.2 Y-box-binding protein 1 1476 bp NP_001016677 X. tropicalis
NM_001085898 NM_001085898.1 Y-box-binding protein 1 1473 bp NP_001079367 X. laevis.L
NM_001086861 NM_001086861.1 B box-binding protein 1426 bp NP_001080330 X. laevis.S
XM_018226803 XM_018226803.1 B box-binding protein isoform X1 1539 bp XP_018082292 X. laevis.S
XM_041570377 XM_041570377.1 XP_041426311.1 B box-binding protein isoform X1 1710 bp XP_041426311 X. laevis.S

Models - Gene (37)

Source Version Model Species
NCBI 10.1 XBXL10_1g31311 X. laevis.L
NCBI 10.1 XBXL10_1g33477 X. laevis.S
NCBI 10.0 XBXT10g003060 X. tropicalis
ENSEMBL 10.0 ybx1 X. tropicalis
Xenbase 9.2 gene8127 X. laevis.S
Xenbase 9.2 gene682 X. laevis.L
Xenbase 9.1 gene8205 X. tropicalis
ENSEMBL 9.1 ybx1 X. tropicalis
JGI 8.0 Xetrov14030728m.g X. tropicalis
JGI 7.2 Xelaev16002227m.g X. laevis.L
JGI 7.1 Xetro.J00693 X. tropicalis
JGI 6.0 XeXenL6RMv10001828m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000013436 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2570031 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2570032 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000002 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000004 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2570014 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000006 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000007 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_257000007 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_257000030 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_257000031 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_257000014 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000005 X. tropicalis
JGI 4.1 e_gw1.257.116.1 X. tropicalis
JGI 4.1 e_gw1.257.117.1 X. tropicalis
JGI 4.1 e_gw1.257.70.1 X. tropicalis
JGI 4.1 gw1.257.116.1 X. tropicalis
JGI 4.1 gw1.257.117.1 X. tropicalis
JGI 4.1 gw1.257.70.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2570025 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2570070 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2570116 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2570117 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2570007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2570030 X. tropicalis

mRNAs based on gene models(47)

Source Version Model Species
NCBI 10.1 XBmRNA63172 X. laevis.S
NCBI 10.1 XBmRNA59222 X. laevis.L
ENSEMBL 10.0 ENSXETT00000029443 X. tropicalis
ENSEMBL 10.0 ENSXETT00000101882 X. tropicalis
ENSEMBL 10.0 ENSXETT00000121433 X. tropicalis
ENSEMBL 10.0 ENSXETT00000120660 X. tropicalis
NCBI 10.0 mRNA015537 X. tropicalis
Xenbase 9.2 rna23676 X. laevis.S
Xenbase 9.2 rna1990 X. laevis.L
ENSEMBL 9.1 ENSXETT00000029443 X. tropicalis
ENSEMBL 9.1 ENSXETT00000101882 X. tropicalis
Xenbase 9.1 rna26510 X. tropicalis
JGI 8.0 Xetrov14030728m X. tropicalis
JGI 7.2 Xelaev16002227m X. laevis.L
JGI 7.1 Xetro.J00693.5 X. tropicalis
JGI 7.1 Xetro.J00693.6 X. tropicalis
JGI 7.1 Xetro.J00693.7 X. tropicalis
JGI 7.1 Xetro.J00693.1 X. tropicalis
JGI 7.1 Xetro.J00693.2 X. tropicalis
JGI 7.1 Xetro.J00693.3 X. tropicalis
JGI 7.1 Xetro.J00693.4 X. tropicalis
JGI 6.0 XeXenL6RMv10001828m X. laevis.L
JGI 4.1 estExt_fgenesh1_kg.C_2570007 X. tropicalis
ENSEMBL 4.1 ENSXETT00000029443 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2570070 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2570116 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2570117 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_257000007 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_257000030 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_257000031 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_257000014 X. tropicalis
JGI 4.1 e_gw1.257.116.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000004 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000005 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000006 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000007 X. tropicalis
JGI 4.1 gw1.257.116.1 X. tropicalis
JGI 4.1 gw1.257.117.1 X. tropicalis
JGI 4.1 gw1.257.70.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_257000002 X. tropicalis
JGI 4.1 e_gw1.257.117.1 X. tropicalis
JGI 4.1 e_gw1.257.70.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2570030 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2570031 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2570032 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2570014 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2570025 X. tropicalis

mRNAs from cDNA libraries (16)

Clone Accession Species Library Anatomy Stage
IMAGE:9040091 BC170833 X. tropicalis
IMAGE:9040093 BC170835 X. tropicalis
NM_001016677 X. tropicalis
TNeu074h11 CR760096 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu081b14 CR760222 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA008a12 CU075424 X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
M59453 X. laevis.L
NM_001085898 X. laevis.L
IMAGE:4681490 BC041191 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:7975474 BC106323 X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
S10-57-h3 AF550003 X. laevis.S
IMAGE:5570493 BC042217 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001086861 X. laevis.S
X60217 X. laevis.S
XM_018226803 X. laevis.S
XM_041570377 X. laevis.S

ESTs (7235)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu072m16 BX683583 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu067i10 BX683709 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6987043 CF221512 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7540042 CX461033 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6986994 CF221547 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7540190 CX461704 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6986780 CF221864 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7540146 CX461731 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6986295 CF222050 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6986292 CF222056 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7560499 CX463398 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6981367 CF222495 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7561442 CX464936 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6981367 CF222496 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7561880 CX465638 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas008n20 AL628401 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7562085 CX466063 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6976228 CF223008 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:5379142 BQ522947 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7562564 CX467064 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7563294 CX468080 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6976520 CF223084 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7521029 CX469034 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6976617 CF223630 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7521591 CX469605 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6977317 CF223704 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7521311 CX469650 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6977148 CF223940 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7521967 CX470203 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6977530 CF224494 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7522273 CX470988 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas018a10 AL629433 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7522421 CX471021 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7522332 CX471367 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6981696 CF225388 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7522761 CX471679 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:5379276 BQ523005 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7523245 CX473017 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6981631 CF225462 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7523253 CX473072 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6982087 CF225961 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7563753 CX473608 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas008o19 AL630071 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7563625 CX473718 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:5379346 BQ523227 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7563888 CX473889 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6982062 CF226005 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7564035 CX474235 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas009o13 AL630157 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7564587 CX474743 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:5379474 BQ523629 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7564385 CX474992 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7564362 CX475160 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6981968 CF226155 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7564530 CX475333 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7565035 CX475506 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7535646 CX476733 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6982683 CF226184 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7536455 CX477883 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6982593 CF226233 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7536464 CX477941 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6983015 CF226429 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7536943 CX478271 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6982853 CF226522 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:7536673 CX478378 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7519146 CX478901 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7519060 CX478964 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6994528 CF237420 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7519671 CX479215 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6994381 CF237517 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7519459 CX479372 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6994038 CF237947 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7519532 CX479534 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6994030 CF237959 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7519508 CX479689 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6993488 CF238297 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7519758 CX480070 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6993446 CF238334 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7566797 CX506773 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7566950 CX507150 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567617 CX508113 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6996054 CF238615 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7567491 CX508234 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6995872 CF238888 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7567415 CX508373 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7550254 CX509013 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6995805 CF238947 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7550477 CX509232 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6995392 CF238988 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7551306 CX510934 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6995378 CF239013 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7551921 CX511221 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6995587 CF239255 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7571517 CX512309 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6995577 CF239265 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7571222 CX512575 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6995269 CF239351 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7571621 CX513011 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:6994736 CF239922 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19