Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (47) GO Terms (28) Nucleotides (219) Proteins (63) Interactants (382) Wiki
XB-GENEPAGE-481888

Show:     All X. tropicalis X. laevis

Nucleotide sequences for sox13 - All

RefSeq mRNAs(8)
Models - Gene (26)
Models - mRNA (33)
mRNAs (12)
ESTs (102)

RefSeq mRNAs (8)

Accession Version Protein Name Length Protein Species
NM_001017004 NM_001017004.2 transcription factor Sox-13 1941 bp NP_001017004 X. tropicalis
XM_012963150 XM_012963150.3 transcription factor Sox-13 isoform X1 3659 bp XP_012818604 X. tropicalis
XM_012963155 XM_012963155.3 transcription factor Sox-13 isoform X2 3647 bp XP_012818609 X. tropicalis
XM_012963160 XM_012963160.3 transcription factor Sox-13 isoform X3 3565 bp XP_012818614 X. tropicalis
XM_018091269 XM_018091269.1 transcription factor Sox-13 isoform X1 3062 bp XP_017946758 X. tropicalis
XM_018091270 XM_018091270.2 transcription factor Sox-13 isoform X3 3498 bp XP_017946759 X. tropicalis
XM_018091271 XM_018091271.2 transcription factor Sox-13 isoform X4 3467 bp XP_017946760 X. tropicalis
NM_001087769 NM_001087769.1 transcription factor Sox-13 2000 bp NP_001081238 X. laevis.S

Models - Gene (26)

Source Version Model Species
NCBI 10.1 XBXL10_1g9700 X. laevis.S
NCBI 10.0 XBXT10g016812 X. tropicalis
ENSEMBL 10.0 sox13 X. tropicalis
Xenbase 9.2 gene5721 X. laevis.S
JGI 9.1 Xelaev18014852m.g X. laevis.S
Xenbase 9.1 gene24574 X. tropicalis
ENSEMBL 9.1 sox13 X. tropicalis
JGI 7.2 Xelaev16015100m.g X. laevis.S
JGI 7.1 Xetro.A01276 X. tropicalis
JGI 6.0 XeXenL6RMv10020345m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000017139 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_429000001 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_429000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_429000003 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_429000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_429000002 X. tropicalis
JGI 4.1 e_gw1.429.20.1 X. tropicalis
JGI 4.1 e_gw1.429.85.1 X. tropicalis
JGI 4.1 e_gw1.429.86.1 X. tropicalis
JGI 4.1 e_gw1.429.87.1 X. tropicalis
JGI 4.1 e_gw1.429.89.1 X. tropicalis
JGI 4.1 gw1.429.20.1 X. tropicalis
JGI 4.1 gw1.429.85.1 X. tropicalis
JGI 4.1 gw1.429.86.1 X. tropicalis
JGI 4.1 gw1.429.87.1 X. tropicalis
JGI 4.1 gw1.429.89.1 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.1 XBmRNA18117 X. laevis.S
NCBI 10.0 mRNA083191 X. tropicalis
ENSEMBL 10.0 ENSXETT00000079259 X. tropicalis
ENSEMBL 10.0 ENSXETT00000037344 X. tropicalis
ENSEMBL 10.0 ENSXETT00000116085 X. tropicalis
ENSEMBL 10.0 ENSXETT00000064129 X. tropicalis
Xenbase 9.2 rna16747 X. laevis.S
ENSEMBL 9.1 ENSXETT00000064129 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079259 X. tropicalis
ENSEMBL 9.1 ENSXETT00000037344 X. tropicalis
Xenbase 9.1 rna48885 X. tropicalis
JGI 9.1 Xelaev18014852m X. laevis.S
JGI 7.2 Xelaev16015100m X. laevis.S
JGI 7.1 Xetro.A01276.2 X. tropicalis
JGI 7.1 Xetro.A01276.1 X. tropicalis
JGI 7.1 Xetro.A01276.3 X. tropicalis
JGI 6.0 XeXenL6RMv10020345m X. laevis.S
JGI 4.1 fgenesh1_pm.C_scaffold_429000001 X. tropicalis
JGI 4.1 e_gw1.429.85.1 X. tropicalis
JGI 4.1 e_gw1.429.86.1 X. tropicalis
JGI 4.1 e_gw1.429.87.1 X. tropicalis
JGI 4.1 e_gw1.429.89.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000037344 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_429000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_429000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_429000003 X. tropicalis
JGI 4.1 e_gw1.429.20.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_429000001 X. tropicalis
JGI 4.1 gw1.429.20.1 X. tropicalis
JGI 4.1 gw1.429.85.1 X. tropicalis
JGI 4.1 gw1.429.86.1 X. tropicalis
JGI 4.1 gw1.429.87.1 X. tropicalis
JGI 4.1 gw1.429.89.1 X. tropicalis

mRNAs from cDNA libraries (12)

Clone Accession Species Library Anatomy Stage
TGas067m20 CR762311 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_001017004 X. tropicalis
XM_012963150 X. tropicalis
XM_012963155 X. tropicalis
XM_012963160 X. tropicalis
XM_018091269 X. tropicalis
XM_018091270 X. tropicalis
XM_018091271 X. tropicalis
IMAGE:6636177 BC068647 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
D50552 X. laevis.S
NM_001087769 X. laevis.S
X65655 X65655 X. laevis.S

ESTs (102)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7027099 CF784756 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:8928635 EL676978 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
THdA050l04 CR585487 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA004k08 CR563971 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TNeu058p14 AL674392 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu055g15 AL676811 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu093d07 AL779209 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu140i04 AL802470 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7521125 CX469038 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7669981 CX876940 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
TTbA012i21 CR408820 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7592697 DR890348 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7633183 CX374304 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7594847 CX331926 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTpA037j22 BX745226 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
st19n03 DC168497 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8886052 EL843066 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8926848 EL673824 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8923318 EL665057 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
L1G12b11 AL643546 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas029k20 AL652461 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas067m20 AL682432 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas071p22 AL773936 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8928635 EL676977 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7669981 CX876939 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
rst19n03 DC138413 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8886052 EL843067 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7594847 DR890802 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu055g15 BX685857 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu093d07 BX693163 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7521125 CX469037 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA050l04 CR585488 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7027099 CF784755 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
THdA004k08 CR563972 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8923318 EL665056 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
TTbA012i21 CR408821 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas067m20 BX748381 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA052o14 CR587070 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
xl319o23 DC128957 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:6636177 BU910375 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGp998I0914211 BX844125 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XL154b04 BJ096472 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL173d22 BJ097082 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL189d07 BJ619429 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL201n19 BJ622667 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3751449 BG345875 5' X. laevis.S Xenopus laevis gastrula non normalized whole organism NF stage 10.5 to NF stage 11.5
xl228o18 DC102329 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl236e23 DC104568 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl249l19 DC108659 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl250a19 DC108759 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl287d09 DC119521 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:7297841 CO388393 5' X. laevis.S Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
xl332g21 DC132800 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl332j07 DC132852 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl333o24 DC133243 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl334o24 DC133506 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL416k13ex BP674400 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL453e18ex BP687123 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL461b19ex BP690302 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL487g03ex BP699326 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk154i05ex DC062383 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL012k22 BJ029510 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL020l24 BJ033426 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL034n07 BJ036298 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL046o16 BJ040579 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL033l13 BJ043067 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:4058981 BG018534 5' X. laevis.S Wellcome CRC pCS2+ st19-26 whole organism NF stage 19 to NF stage 26
IMAGp998J069331 BX843299 5' X. laevis.S Wellcome CRC pCS2+ st19-26 whole organism NF stage 19 to NF stage 26
IMAGE:5516128 CF286515 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL060d17 BJ058710 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL088g22 BJ066855 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL100a03 BJ067242 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL109k21 BJ073328 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL012k22 BJ044239 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
rxlk154i05ex DC028861 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL487g03ex BP732266 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL461b19ex BP724919 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL453e18ex BP722777 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL416k13ex BP712053 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxl334o24 DC097478 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL100a03 BJ084653 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxl333o24 DC097223 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl332g21 DC096811 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl287d09 DC084769 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl250a19 DC074237 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl249l19 DC074141 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl242m05 DC072215 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl236e23 DC070345 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl228o18 DC068250 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:3751449 BG023495 3' X. laevis.S Xenopus laevis gastrula non normalized whole organism NF stage 10.5 to NF stage 11.5
XL201n19 BJ639345 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL199c14 BJ638614 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL189d07 BJ636065 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL173d22 BJ100070 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3421116 BG408168 3' X. laevis.S Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
XL020l24 BJ048716 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL031f11 BJ051291 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL046o16 BJ054953 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL033l13 BJ057010 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15