Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (60) GO Terms (23) Nucleotides (140) Proteins (60) Interactants (666) Wiki
XB-GENEPAGE-482575

Show:     All X. tropicalis X. laevis

Nucleotide sequences for hoxb3 - All

RefSeq mRNAs(27)
Models - Gene (21)
Models - mRNA (29)
mRNAs (29)
ESTs (18)

RefSeq mRNAs (27)

Accession Version Protein Name Length Protein Species
NM_001015971 NM_001015971.2 homeobox protein Hox-B3 1964 bp NP_001015971 X. tropicalis
XM_012971746 XM_012971746.3 homeobox protein Hox-B3 isoform X1 2878 bp XP_012827200 X. tropicalis
XM_012971747 XM_012971747.3 homeobox protein Hox-B3 isoform X1 3313 bp XP_012827201 X. tropicalis
XM_012971748 XM_012971748.3 homeobox protein Hox-B3 isoform X1 3062 bp XP_012827202 X. tropicalis
XM_012971749 XM_012971749.3 homeobox protein Hox-B3 isoform X1 2996 bp XP_012827203 X. tropicalis
XM_012971750 XM_012971750.3 homeobox protein Hox-B3 isoform X1 2872 bp XP_012827204 X. tropicalis
XM_012971751 XM_012971751.3 homeobox protein Hox-B3 isoform X1 4067 bp XP_012827205 X. tropicalis
XM_012971752 XM_012971752.3 homeobox protein Hox-B3 isoform X1 2813 bp XP_012827206 X. tropicalis
XM_012971754 XM_012971754.3 homeobox protein Hox-B3 isoform X1 3485 bp XP_012827208 X. tropicalis
XM_018097735 XM_018097735.2 homeobox protein Hox-B3 isoform X1 2932 bp XP_017953224 X. tropicalis
XM_018238026 XM_018238026.2 homeobox protein Hox-B3a isoform X1 8673 bp XP_018093515 X. laevis.S
XM_018238026 homeobox protein Hox-B3a isoform X1 8673 bp XP_018093515 X. laevis.S
XM_041578014 XM_041578014.1 XP_041433948.1 homeobox protein Hox-B3a isoform X1 3662 bp XP_041433948 X. laevis.S
XM_041578015 XM_041578015.1 XP_041433949.1 homeobox protein Hox-B3a isoform X1 5374 bp XP_041433949 X. laevis.S
XM_041578016 XM_041578016.1 XP_041433950.1 homeobox protein Hox-B3a isoform X1 2925 bp XP_041433950 X. laevis.S
XM_041578017 XM_041578017.1 XP_041433951.1 homeobox protein Hox-B3a isoform X1 2877 bp XP_041433951 X. laevis.S
XM_041578018 XM_041578018.1 XP_041433952.1 homeobox protein Hox-B3a isoform X1 5284 bp XP_041433952 X. laevis.S
XM_041578019 XM_041578019.1 XP_041433953.1 homeobox protein Hox-B3a isoform X1 2791 bp XP_041433953 X. laevis.S
XM_041578020 XM_041578020.1 XP_041433954.1 homeobox protein Hox-B3a isoform X2 3665 bp XP_041433954 X. laevis.S
XM_018234765 XM_018234765.2 homeobox protein Hox-B3a 1950 bp XP_018090254 X. laevis.L
XM_018234765 homeobox protein Hox-B3a 1950 bp XP_018090254 X. laevis.L
XM_018234766 XM_018234766.2 homeobox protein Hox-B3a 2036 bp XP_018090255 X. laevis.L
XM_018234766 homeobox protein Hox-B3a 2036 bp XP_018090255 X. laevis.L
XM_018234768 XM_018234768.2 homeobox protein Hox-B3a 1676 bp XP_018090257 X. laevis.L
XM_018234768 homeobox protein Hox-B3a 1676 bp XP_018090257 X. laevis.L
XM_018234773 XM_018234773.2 homeobox protein Hox-B3a 2284 bp XP_018090262 X. laevis.L
XM_018234773 homeobox protein Hox-B3a 2284 bp XP_018090262 X. laevis.L

Models - Gene (21)

Source Version Model Species
NCBI 10.1 XBXL10_1g42289 X. laevis.S
NCBI 10.0 XBXT10g001190 X. tropicalis
NCBI 10.1 XBXL10_1g39061 X. laevis.L
ENSEMBL 10.0 hoxb3 X. tropicalis
Xenbase 9.1 gene3529 X. tropicalis
ENSEMBL 9.1 hoxb3 X. tropicalis
JGI 8.0 Xetrov14041301m.g X. tropicalis
JGI 7.2 Xelaev16009239m.g X. laevis.S
JGI 7.1 Xetro.J00749 X. tropicalis
JGI 6.0 XeXenL6RMv10014013m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000021967 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_334000011 X. tropicalis
JGI 4.1 e_gw1.334.6.1 X. tropicalis
JGI 4.1 e_gw1.334.77.1 X. tropicalis
JGI 4.1 gw1.334.27.1 X. tropicalis
JGI 4.1 gw1.334.6.1 X. tropicalis
JGI 4.1 gw1.334.77.1 X. tropicalis
JGI 4.1 LAU_fgenesh1_Sanger_cdna.C_scaffold_334000003 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_334000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_334000022 X. tropicalis
JGI 4.1 e_gw1.334.27.1 X. tropicalis

mRNAs based on gene models(29)

Source Version Model Species
NCBI 10.1 XBmRNA73683 X. laevis.L
NCBI 10.1 XBmRNA79500 X. laevis.S
ENSEMBL 10.0 ENSXETT00000108477 X. tropicalis
NCBI 10.0 mRNA005948 X. tropicalis
ENSEMBL 10.0 ENSXETT00000110200 X. tropicalis
ENSEMBL 10.0 ENSXETT00000115490 X. tropicalis
ENSEMBL 10.0 ENSXETT00000117597 X. tropicalis
ENSEMBL 10.0 ENSXETT00000118712 X. tropicalis
ENSEMBL 10.0 ENSXETT00000118763 X. tropicalis
ENSEMBL 10.0 ENSXETT00000120390 X. tropicalis
ENSEMBL 10.0 ENSXETT00000047547 X. tropicalis
Xenbase 9.1 rna11587 X. tropicalis
ENSEMBL 9.1 ENSXETT00000047547 X. tropicalis
JGI 8.0 Xetrov14041301m X. tropicalis
JGI 7.2 Xelaev16009239m X. laevis.S
JGI 7.1 Xetro.J00749.1 X. tropicalis
JGI 7.1 Xetro.J00749.2 X. tropicalis
JGI 6.0 XeXenL6RMv10014013m X. laevis.S
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_334000003 X. tropicalis
JGI 4.1 gw1.334.27.1 X. tropicalis
JGI 4.1 gw1.334.6.1 X. tropicalis
JGI 4.1 gw1.334.77.1 X. tropicalis
JGI 4.1 LAU_fgenesh1_Sanger_cdna.C_scaffold_334000003 X. tropicalis
JGI 4.1 e_gw1.334.27.1 X. tropicalis
JGI 4.1 e_gw1.334.6.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000047547 X. tropicalis
JGI 4.1 e_gw1.334.77.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_334000022 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_334000011 X. tropicalis

mRNAs from cDNA libraries (29)

Clone Accession Species Library Anatomy Stage
IMAGE:7607216 BC135406 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu134e01 CR848404 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001015971 X. tropicalis
XM_012971746 X. tropicalis
XM_012971747 X. tropicalis
XM_012971748 X. tropicalis
XM_012971749 X. tropicalis
XM_012971750 X. tropicalis
XM_012971751 X. tropicalis
XM_012971752 X. tropicalis
XM_012971754 X. tropicalis
XM_018097735 X. tropicalis
XM_018238026 X. laevis.S
XM_018238026 X. laevis.S
XM_041578014 X. laevis.S
XM_041578015 X. laevis.S
XM_041578016 X. laevis.S
XM_041578017 X. laevis.S
XM_041578018 X. laevis.S
XM_041578019 X. laevis.S
XM_041578020 X. laevis.S
XM_018234765 X. laevis.L
XM_018234765 X. laevis.L
XM_018234766 X. laevis.L
XM_018234766 X. laevis.L
XM_018234768 X. laevis.L
XM_018234768 X. laevis.L
XM_018234773 X. laevis.L
XM_018234773 X. laevis.L

ESTs (18)

Clone Accession 5'/3' Species Library Anatomy Stage
L1G3e4 AL643764 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:5336500 BQ522210 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7607216 CX367600 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu134e01 AL789791 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7631738 CX397571 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7607216 CX367599 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu134e01 BX699571 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5336500 BQ522209 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7631738 CX397570 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8317790 DY570900 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
p8a3 AU244889 5' X. laevis.S Shibata Xenopus AEM lambda-ZAP II cDNA library endomesoderm NF stage 12.5 to NF stage 13
XL094c23 BJ071372 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL012i13 BJ029460 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
xl337a18 DC134088 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL070e15 BJ063151 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL100o19 BJ067523 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL094c23 BJ091114 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL100o19 BJ084911 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25