Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Gene Literature (62) GO Terms (9) Nucleotides (160) Proteins (51) Interactants (1007) Wiki
XB-GENEPAGE-482730

All tropicalis laevis

Nucleotide sequences for hoxd1 - All

Models - Gene (30)
Models - mRNA (30)
Unigene Clusters (3)
Gurdon EST Clusters (2)
mRNAs (12)
ESTs (78)

Models - Gene (30)

Source Version Model Species
NCBI 10.0 XBXT10g008423 X. tropicalis
Xenbase 9.1 gene6865 X. tropicalis
JGI 9.1 Xelaev18047201m.g X. laevis.S
Xenbase 9.2 gene3878 X. laevis.S
JGI 9.1 Xelaev18044734m.g X. laevis.L
Xenbase 9.2 gene38536 X. laevis.L
JGI 8.0 Xetrov14037301m.g X. tropicalis
JGI 7.1 Xetro.I00364 X. tropicalis
JGI 7.2 Xelaev16053022m.g X. laevis.S
JGI 6.0 XeXenL6RMv10024613m.g X. laevis.S
JGI 6.0 XeXenL6RMv10027980m.g X. laevis.S
JGI 4.1 estExt_fgenesh1_kg.C_1630003 X. tropicalis
ENSEMBL 4.1 ENSXETG00000001801 X. tropicalis
JGI 4.1 gw1.163.188.1 X. tropicalis
JGI 4.1 gw1.163.189.1 X. tropicalis
JGI 4.1 e_gw1.163.187.1 X. tropicalis
JGI 4.1 e_gw1.163.188.1 X. tropicalis
JGI 4.1 e_gw1.163.189.1 X. tropicalis
JGI 4.1 gw1.163.187.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1630004 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1630187 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1630188 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1630189 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1630004 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_163000003 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_163000004 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_163000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_163000014 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_163000015 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_163000004 X. tropicalis

Models - mRNA (30)

Source Version Model Species
NCBI 10.0 mRNA041793 X. tropicalis
JGI 9.1 Xelaev18044734m X. laevis.L
JGI 9.1 Xelaev18047201m X. laevis.S
Xenbase 9.1 rna22161 X. tropicalis
Xenbase 9.2 rna79733 X. laevis.L
Xenbase 9.2 rna11300 X. laevis.S
JGI 8.0 Xetrov14037301m X. tropicalis
JGI 7.1 Xetro.I00364.1 X. tropicalis
JGI 7.2 Xelaev16053022m X. laevis.S
JGI 6.0 XeXenL6RMv10024613m X. laevis.S
JGI 6.0 XeXenL6RMv10027980m X. laevis.S
JGI 4.1 estExt_fgenesh1_kg.C_1630003 X. tropicalis
ENSEMBL 4.1 ENSXETT00000003767 X. tropicalis
JGI 4.1 e_gw1.163.187.1 X. tropicalis
JGI 4.1 e_gw1.163.188.1 X. tropicalis
JGI 4.1 e_gw1.163.189.1 X. tropicalis
JGI 4.1 gw1.163.188.1 X. tropicalis
JGI 4.1 gw1.163.189.1 X. tropicalis
JGI 4.1 gw1.163.187.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1630004 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1630187 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1630188 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1630189 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1630004 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_163000003 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_163000004 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_163000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_163000014 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_163000015 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_163000004 X. tropicalis

Gurdon EST Clusters (2)

ID Species
1012074520 X. tropicalis
1012775263 X. laevis.S

mRNAs (12)

Clone Accession Species Library Anatomy Stage
TNeu039b14 CR760220 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7549460 BC160395 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
NM_001016678 X. tropicalis
IMAGE:9040223 BC170965 X. tropicalis
IMAGE:9040219 BC170961 X. tropicalis
IMAGE:7980230 BC106402 X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
L25857 X. laevis.S
M63873 X. laevis.S
NM_001090566 X. laevis.S
XM_018237390 X. laevis.S
XM_018235932 X. laevis.L
X62052 X. laevis.S

ESTs (78)

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu075e19 BX683533 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu069h22 BX683129 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st33n18 DC173005 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st88l16 DC188624 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7549460 CX485001 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7538129 CX447157 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7537257 CX445787 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7536247 CX477121 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7534798 CX429663 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7574483 CX441018 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7574120 CX440833 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7569441 CX458002 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7564152 CX474711 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7560511 CX516308 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542561 DR888895 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7521696 CX470639 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7520922 CX469283 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas123n15 AL955743 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas088m04 AL955131 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas036a08 AL648277 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas036i06 AL651567 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu111e09 AL793549 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu096h04 AL786904 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu075e19 AL785692 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu069h22 AL781643 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas059d22 AL682807 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu039b14 AL660839 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu025h06 AL644077 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu020m16 AL635601 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
rst88l16 DC158518 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst33n18 DC142743 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7521696 CX470638 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7520922 CX469282 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7560511 CX516307 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7549460 CX485000 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7564152 CX474710 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7569441 CX458001 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542561 CX449616 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7538129 CX447156 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7537257 CX445786 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7574483 CX441017 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7574120 CX440832 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7534798 CX429662 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas123n15 BX760165 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas088m04 BX752493 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas059d22 BX747503 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu102e19 BX694278 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xlk76i22ex DC059840 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk104b07ex DC036939 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8318749 DY545700 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7981910 DR723973 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7980230 DR719307 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL419m11ex BP675457 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL457h21ex BP688464 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL448a05ex BP685063 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL519h09ex BP707009 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL428m10ex BP678088 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGp998K178305 BX853092 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XL209o05 BJ624891 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3475513 BG892726 5' X. laevis.S Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21
IMAGE:3403144 BG364757 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XENOPUS_SOURCE_ID:xlnga002n19 AW164973 5' X. laevis.S normalized Xenopus laevis gastrula whole organism NF stage 10.5 to NF stage 11.5
8B3 AI031122 5' X. laevis.S Xenopus neurula plasmid library whole organism NF stage 13
rxl227e20 DC067821 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl312m02 DC091783 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl239k06 DC071327 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxlk76i22ex DC026394 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk104b07ex DC004065 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:7981910 DR723974 3' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL519f09ex BP739305 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL457h21ex BP723674 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL419m11ex BP712921 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL209o05 BJ641388 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL017b08 BJ047599 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3475513 BG885787 3' X. laevis.S Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21
IMAGE:3403144 BG020595 3' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XENOPUS_SOURCE_ID:xlnga002n19 AW164893 3' X. laevis.S normalized Xenopus laevis gastrula whole organism NF stage 10.5 to NF stage 11.5
8B3 AI031123 3' X. laevis.S Xenopus neurula plasmid library whole organism NF stage 13