Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (45) GO Terms (14) Nucleotides (97) Proteins (48) Interactants (425) Wiki
XB-GENEPAGE-483145

Show:     All X. tropicalis X. laevis

Nucleotide sequences for six6 - All

RefSeq mRNAs(3)
Models - Gene (31)
Models - mRNA (31)
mRNAs (9)
ESTs (20)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001100226 NM_001100226.1 homeobox protein SIX6 1076 bp NP_001093696 X. tropicalis
NM_001088464 NM_001088464.1 SIX homeobox 6 L homeolog 1593 bp NP_001081933 X. laevis.L
NM_001085717 NM_001085717.1 SIX homeobox 6 S homeolog 1235 bp NP_001079186 X. laevis.S

Models - Gene (31)

Source Version Model Species
NCBI 10.1 XBXL10_1g36000 X. laevis.L
NCBI 10.1 XBXL10_1g37213 X. laevis.S
NCBI 10.0 XBXT10g015579 X. tropicalis
ENSEMBL 10.0 six6 X. tropicalis
Xenbase 9.2 gene1243 X. laevis.L
Xenbase 9.2 gene9264 X. laevis.S
JGI 9.1 Xelaev18039804m.g X. laevis.L
JGI 9.1 Xelaev18041131m.g X. laevis.S
Xenbase 9.1 gene8503 X. tropicalis
ENSEMBL 9.1 six6 X. tropicalis
JGI 8.0 Xetrov14035087m.g X. tropicalis
JGI 7.2 Xelaev16009743m.g X. laevis.S
JGI 7.2 Xelaev16055659m.g X. laevis.L
JGI 7.1 Xetro.H01610 X. tropicalis
JGI 6.0 XeXenL6RMv10015143m.g X. laevis.L
JGI 6.0 XeXenL6RMv10015143m.g X. laevis.S
JGI 6.0 XeXenL6RMv10036797m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000016945 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_680065 X. tropicalis
JGI 4.1 gw1.68.200.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680199 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680200 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680131 X. tropicalis
JGI 4.1 gw1.68.199.1 X. tropicalis
JGI 4.1 gw1.68.131.1 X. tropicalis
JGI 4.1 e_gw1.68.200.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_68000112 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_680040 X. tropicalis
JGI 4.1 e_gw1.68.199.1 X. tropicalis
JGI 4.1 e_gw1.68.131.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_680110 X. tropicalis

mRNAs based on gene models(31)

Source Version Model Species
NCBI 10.1 XBmRNA70213 X. laevis.S
NCBI 10.1 XBmRNA68081 X. laevis.L
ENSEMBL 10.0 ENSXETT00000036923 X. tropicalis
NCBI 10.0 mRNA077140 X. tropicalis
Xenbase 9.2 rna26900 X. laevis.S
Xenbase 9.2 rna3617 X. laevis.L
Xenbase 9.1 rna27514 X. tropicalis
JGI 9.1 Xelaev18041131m X. laevis.S
JGI 9.1 Xelaev18039804m X. laevis.L
ENSEMBL 9.1 ENSXETT00000036923 X. tropicalis
JGI 8.0 Xetrov14035087m X. tropicalis
JGI 7.2 Xelaev16009743m X. laevis.S
JGI 7.2 Xelaev16055659m X. laevis.L
JGI 7.1 Xetro.H01610.1 X. tropicalis
JGI 6.0 XeXenL6RMv10036797m X. laevis.L
JGI 6.0 XeXenL6RMv10015143m X. laevis.S
JGI 6.0 XeXenL6RMv10015143m X. laevis.L
JGI 4.1 e_gw1.68.131.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000036923 X. tropicalis
JGI 4.1 gw1.68.200.1 X. tropicalis
JGI 4.1 gw1.68.199.1 X. tropicalis
JGI 4.1 gw1.68.131.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_68000112 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680199 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680200 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680131 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_680065 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_680040 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_680110 X. tropicalis
JGI 4.1 e_gw1.68.200.1 X. tropicalis
JGI 4.1 e_gw1.68.199.1 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
IMAGE:7623919 BC135852 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
NM_001100226 X. tropicalis
AF081352 X. laevis.L
AF108811 X. laevis.L
IMAGE:9041339 BC169705 X. laevis.L
IMAGE:9041341 BC169707 X. laevis.L
NM_001088464 X. laevis.L
IMAGE:5571939 BC042277 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001085717 X. laevis.S

ESTs (20)

Clone Accession 5'/3' Species Library Anatomy Stage
xthr31J21 CN108283 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr19F17 CN101637 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTpA042o24 BX728378 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7623919 CX373377 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7599136 CX343632 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTpA042o24 BX728379 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7599136 CX343631 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7623919 DR899346 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xthr19F17 CN101636 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr31J21 CN108282 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8884065 EL839716 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
XL102g13 BJ067669 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL434a19ex BP680166 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL518f09ex BP706624 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk130o09ex DC045548 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk139b15ex DC048190 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk68e08ex DC056875 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:5571939 BQ737216 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL419d21ex BP675276 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL434a19ex BP716884 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5