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Summary Expression Phenotypes Gene Literature (16) GO Terms (47) Nucleotides (92) Proteins (47) Interactants (418) Wiki
XB-GENEPAGE-483573

Show:     All X. tropicalis X. laevis

Nucleotide sequences for nkx6-1 - All

RefSeq mRNAs(3)
Models - Gene (30)
Models - mRNA (34)
mRNAs (9)
ESTs (7)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001016583 NM_001016583.3 homeobox protein Nkx-6.1 1029 bp NP_001016583 X. tropicalis
NM_001099916 NM_001099916.1 NK6 homeobox 1 L homeolog 2749 bp NP_001093386 X. laevis.L
XM_018240520 XP_018096009.1 homeobox protein Nkx-6.1 1680 bp XP_018096009 X. laevis.S

Models - Gene (30)

Source Version Model Species
NCBI 10.1 XBXL10_1g1369 X. laevis.L
NCBI 10.1 XBXL10_1g4239 X. laevis.S
NCBI 10.0 XBXT10g001882 X. tropicalis
ENSEMBL 10.0 nkx6-1 X. tropicalis
Xenbase 9.2 gene9292 X. laevis.L
JGI 9.1 Xelaev18001995m.g X. laevis.S
JGI 9.1 Xelaev18005952m.g X. laevis.L
Xenbase 9.1 gene5879 X. tropicalis
ENSEMBL 9.1 nkx6-1 X. tropicalis
JGI 8.0 Xetrov14003497m.g X. tropicalis
JGI 7.2 Xelaev16000232m.g X. laevis.L
JGI 7.1 Xetro.A02481 X. tropicalis
JGI 6.0 XeXenL6RMv10009196m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000013227 X. tropicalis
JGI 4.1 C_scaffold_323000005 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_323000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_323000017 X. tropicalis
JGI 4.1 e_gw1.323.104.1 X. tropicalis
JGI 4.1 e_gw1.323.2.1 X. tropicalis
JGI 4.1 e_gw1.323.85.1 X. tropicalis
JGI 4.1 gw1.323.104.1 X. tropicalis
JGI 4.1 gw1.323.2.1 X. tropicalis
JGI 4.1 gw1.323.85.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3230006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3230002 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3230085 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3230104 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3230017 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_3230003 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_323000004 X. tropicalis

mRNAs based on gene models(34)

Source Version Model Species
NCBI 10.1 XBmRNA7827 X. laevis.S
NCBI 10.1 XBmRNA2324 X. laevis.L
ENSEMBL 10.0 ENSXETT00000060579 X. tropicalis
ENSEMBL 10.0 ENSXETT00000028958 X. tropicalis
NCBI 10.0 mRNA009505 X. tropicalis
Xenbase 9.2 rna26990 X. laevis.L
ENSEMBL 9.1 ENSXETT00000028962 X. tropicalis
ENSEMBL 9.1 ENSXETT00000060579 X. tropicalis
ENSEMBL 9.1 ENSXETT00000028958 X. tropicalis
Xenbase 9.1 rna19006 X. tropicalis
JGI 9.1 Xelaev18005952m X. laevis.L
JGI 9.1 Xelaev18001995m X. laevis.S
JGI 8.0 Xetrov14003497m X. tropicalis
JGI 7.2 Xelaev16000232m X. laevis.L
JGI 7.1 Xetro.A02481.1 X. tropicalis
JGI 6.0 XeXenL6RMv10009196m X. laevis.L
JGI 4.1 gw1.323.2.1 X. tropicalis
JGI 4.1 gw1.323.85.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_323000017 X. tropicalis
JGI 4.1 e_gw1.323.104.1 X. tropicalis
JGI 4.1 e_gw1.323.2.1 X. tropicalis
JGI 4.1 e_gw1.323.85.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000028958 X. tropicalis
ENSEMBL 4.1 ENSXETT00000028962 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3230017 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_3230003 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3230006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3230002 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3230085 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3230104 X. tropicalis
JGI 4.1 C_scaffold_323000005 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_323000003 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_323000004 X. tropicalis
JGI 4.1 gw1.323.104.1 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
IMAGE:7821279 BC122029 X. tropicalis
nkx6-1-HAR127 CR760623 X. tropicalis
EF460791 X. tropicalis
NM_001016583 X. tropicalis
IMAGE:9041012 BC169378 X. laevis.L
IMAGE:9041014 BC169380 X. laevis.L
EF460789 X. laevis.L
NM_001099916 X. laevis.L
XM_018240520 X. laevis.S

ESTs (7)

Clone Accession 5'/3' Species Library Anatomy Stage
TTbA063c09 CR449198 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
xtbs01E06 CN072421 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs01E06 CN072420 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TTpA072p18 BX723418 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:3301114 BE132051 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL102k14 BJ067746 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL102k14 BJ085076 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25