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Summary Expression Phenotypes Gene Literature (580) GO Terms (106) Nucleotides (552) Proteins (48) Interactants (2509) Wiki
XB-GENEPAGE-484552

Show:     All X. tropicalis X. laevis

Nucleotide sequences for sox2 - All

RefSeq mRNAs(3)
Models - Gene (32)
Models - mRNA (32)
mRNAs (19)
ESTs (438)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_213704 NM_213704.3 transcription factor Sox-2 2238 bp NP_998869 X. tropicalis
NM_001088222 NM_001088222.1 transcription factor Sox-2 1190 bp NP_001081691 X. laevis.L
XM_041564856 XM_041564856.1 XP_041420790.1 transcription factor Sox-2 3442 bp XP_041420790 X. laevis.S

Models - Gene (32)

Source Version Model Species
NCBI 10.1 XBXL10_1g23955 X. laevis.L
NCBI 10.0 XBXT10g004990 X. tropicalis
NCBI 10.1 XBXL10_1g25814 X. laevis.S
ENSEMBL 10.0 sox2 X. tropicalis
Xenbase 9.2 gene41682 X. laevis.L
Xenbase 9.2 gene37454 X. laevis.S
JGI 9.1 Xelaev18002672m.g X. laevis.L
Xenbase 9.1 gene1910 X. tropicalis
ENSEMBL 9.1 sox2 X. tropicalis
JGI 8.0 Xetrov14022289m.g X. tropicalis
JGI 7.1 Xetro.E00206 X. tropicalis
JGI 6.0 XeXenL6RMv10008524m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000026292 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2450026 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2450007 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_245000025 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_245000005 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_245000026 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_245000007 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_245000005 X. tropicalis
JGI 4.1 e_gw1.245.61.1 X. tropicalis
JGI 4.1 e_gw1.245.62.1 X. tropicalis
JGI 4.1 e_gw1.245.63.1 X. tropicalis
JGI 4.1 gw1.245.61.1 X. tropicalis
JGI 4.1 gw1.245.62.1 X. tropicalis
JGI 4.1 gw1.245.63.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2450012 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2450061 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2450062 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2450063 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2450005 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2450025 X. tropicalis

mRNAs based on gene models(32)

Source Version Model Species
NCBI 10.1 XBmRNA48276 X. laevis.S
NCBI 10.1 XBmRNA44805 X. laevis.L
ENSEMBL 10.0 ENSXETT00000077539 X. tropicalis
NCBI 10.0 mRNA024736 X. tropicalis
Xenbase 9.2 rna78181 X. laevis.S
Xenbase 9.2 rna84196 X. laevis.L
Xenbase 9.1 rna6251 X. tropicalis
JGI 9.1 Xelaev18002672m X. laevis.L
ENSEMBL 9.1 ENSXETT00000077539 X. tropicalis
JGI 8.0 Xetrov14022289m X. tropicalis
JGI 7.1 Xetro.E00206.1 X. tropicalis
JGI 6.0 XeXenL6RMv10008524m X. laevis.L
JGI 4.1 fgenesh1_kg.C_scaffold_245000005 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2450063 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2450062 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2450061 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2450012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2450007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2450026 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2450025 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2450005 X. tropicalis
JGI 4.1 e_gw1.245.63.1 X. tropicalis
JGI 4.1 e_gw1.245.62.1 X. tropicalis
JGI 4.1 e_gw1.245.61.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000004031 X. tropicalis
JGI 4.1 gw1.245.62.1 X. tropicalis
JGI 4.1 gw1.245.63.1 X. tropicalis
JGI 4.1 gw1.245.61.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_245000007 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_245000005 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_245000026 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_245000025 X. tropicalis

mRNAs from cDNA libraries (19)

Clone Accession Species Library Anatomy Stage
AL782141 X. tropicalis
IMAGE:5308902 BC067975 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
CR566396 X. tropicalis
CR760314 X. tropicalis
NM_213704 X. tropicalis
AF005476 X. laevis.L
AF022928 X. laevis.L
NM_001088222 X. laevis.L
IMAGE:6865551 BC076717 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
GQ292559 X. laevis.S
XM_041564856 X. laevis.S
XR_005961610 X. laevis.S
XR_005961611 X. laevis.S
XR_005961612 X. laevis.S
XR_005961613 X. laevis.S
XR_005961614 X. laevis.S
XR_005961615 X. laevis.S
XR_005961616 X. laevis.S
XR_005961617 X. laevis.S

ESTs (438)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu069g04 BX683105 - X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu010l20 AL638254 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu025g22 AL642397 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu046f19 AL658872 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu036n22 AL659919 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu053a02 AL674398 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu056j10 AL675316 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu063l17 AL777685 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu069g04 AL779323 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu084p18 AL780065 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu076e08 AL782141 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu068p03 AL783120 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu103m14 AL790964 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu128d18 AL796351 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu095c11 AL803323 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu092i02 AL804160 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu092m02 AL804180 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu006d04 AL635166 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st5g19 DC174537 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st6c15 DC174763 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st6l14 DC174926 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st6o08 DC174979 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st7f08 DC175106 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st39h21 DC176564 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:6979117 CF149220 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:6979186 CF149422 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA065d08 CR444447 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
st44d17 DC177709 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st45d17 DC177938 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st47a18 DC178331 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTbA047g19 CR415592 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA024e06 CR420635 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA070l02 CR426634 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA044k21 CR427727 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA049a08 CR429721 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA044e12 CR430347 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA075h08 CR430704 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA032h05 CR433180 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA043k04 CR434925 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA076o05 CR438468 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA074e21 CR439002 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA031i10 CR442001 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA080p15 CR442816 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA074a10 CR444036 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
st62n24 DC182135 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st66b13 DC182951 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st67b06 DC183207 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st67k08 DC183351 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st68h02 DC183552 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st71g10 DC184279 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st72c04 DC184479 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st80g13 DC186600 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st84a18 DC187484 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st87m08 DC188384 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st88d10 DC188485 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st91m04 DC189353 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st93i10 DC189759 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st95k02 DC190259 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st101i06 DC190946 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st102p24 DC191266 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st104j16 DC191643 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st99h12 DC192599 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st107a07 DC193707 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st107j24 DC193828 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st108b19 DC193941 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st109m08 DC194332 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st110j24 DC194542 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st111j24 DC194795 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:5307710 BQ389412 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:5308902 BQ391569 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6989393 CF218784 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6989393 CF218785 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6988158 CF220558 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6987129 CF221437 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7513145 CX741909 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7514433 CX744314 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7515669 CX746482 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7515698 CX746658 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7092208 CK654678 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TGas015d04 AL631961 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas022b13 AL633183 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
L1G11d09 AL639023 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
L1G12b01 AL639075 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas047a20 AL646108 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas027a04 AL647307 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas027j17 AL655466 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas053d06 AL678253 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
sox2-HAR75 AL680500 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas058l15 AL682083 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas058g18 AL682240 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas102p14 AL958471 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas130c22 AL959240 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas114n11 AL959985 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas142l22 AL963109 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas123j08 AL972007 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7530521 CX419764 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7528029 CX424626 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7534338 CX428485 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7532533 CX433274 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5