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Summary Expression Phenotypes Gene Literature (571) GO Terms (62) Nucleotides (309) Proteins (58) Interactants (2245) Wiki
XB-GENEPAGE-485219

Show:     All X. tropicalis X. laevis

Nucleotide sequences for otx2 - All

RefSeq mRNAs(7)
Models - Gene (30)
Models - mRNA (33)
mRNAs (14)
ESTs (202)

RefSeq mRNAs (7)

Accession Version Protein Name Length Protein Species
NM_001016177 NM_001016177.2 homeobox protein OTX2 2047 bp NP_001016177 X. tropicalis
XM_012968372 XM_012968372.3 homeobox protein OTX2 isoform X1 2345 bp XP_012823826 X. tropicalis
NM_001091486 NM_001091486.1 homeobox protein OTX2-B 2315 bp NP_001084955 X. laevis.L
XM_018228840 XM_018228840.2 homeobox protein OTX2-B isoform X1 2313 bp XP_018084329 X. laevis.L
XM_041571994 XM_041571994.1 XP_041427928.1 homeobox protein OTX2-B isoform X1 2245 bp XP_041427928 X. laevis.L
NM_001090691 NM_001090691.1 homeobox protein OTX2-A 1749 bp NP_001084160 X. laevis.S
XM_018231938 XM_018231938.2 homeobox protein OTX2-A isoform X1 2539 bp XP_018087427 X. laevis.S

Models - Gene (30)

Source Version Model Species
NCBI 10.1 XBXL10_1g36033 X. laevis.L
NCBI 10.1 XBXL10_1g37191 X. laevis.S
NCBI 10.0 XBXT10g018260 X. tropicalis
ENSEMBL 10.0 otx2 X. tropicalis
Xenbase 9.2 gene5497 X. laevis.L
Xenbase 9.2 gene18552 X. laevis.S
JGI 9.1 Xelaev18039840m.g X. laevis.L
JGI 9.1 Xelaev18041108m.g X. laevis.S
Xenbase 9.1 gene5460 X. tropicalis
ENSEMBL 9.1 otx2 X. tropicalis
JGI 7.2 Xelaev16078478m.g X. laevis.L
JGI 7.2 Xelaev16009780m.g X. laevis.S
JGI 7.1 Xetro.H01645 X. tropicalis
JGI 6.0 XeXenL6RMv10009265m.g X. laevis.S
JGI 6.0 XeXenL6RMv10032830m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000015687 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_680052 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680240 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680190 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680128 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_68000008 X. tropicalis
JGI 4.1 gw1.68.190.1 X. tropicalis
JGI 4.1 gw1.68.128.1 X. tropicalis
JGI 4.1 e_gw1.68.240.1 X. tropicalis
JGI 4.1 e_gw1.68.190.1 X. tropicalis
JGI 4.1 e_gw1.68.128.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_680036 X. tropicalis
JGI 4.1 gw1.68.240.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_68000054 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_680022 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.1 XBmRNA70172 X. laevis.S
NCBI 10.1 XBmRNA68140 X. laevis.L
ENSEMBL 10.0 ENSXETT00000109956 X. tropicalis
ENSEMBL 10.0 ENSXETT00000034219 X. tropicalis
NCBI 10.0 mRNA090162 X. tropicalis
Xenbase 9.2 rna16099 X. laevis.L
Xenbase 9.2 rna54170 X. laevis.S
ENSEMBL 9.1 ENSXETT00000034219 X. tropicalis
Xenbase 9.1 rna17699 X. tropicalis
JGI 9.1 Xelaev18039840m X. laevis.L
JGI 9.1 Xelaev18041108m X. laevis.S
JGI 7.2 Xelaev16009780m X. laevis.S
JGI 7.2 Xelaev16078478m X. laevis.L
JGI 7.1 Xetro.H01645.2 X. tropicalis
JGI 7.1 Xetro.H01645.1 X. tropicalis
JGI 7.1 Xetro.H01645.3 X. tropicalis
JGI 6.0 XeXenL6RMv10009265m X. laevis.S
JGI 6.0 XeXenL6RMv10032830m X. laevis.L
JGI 4.1 gw1.68.190.1 X. tropicalis
JGI 4.1 e_gw1.68.190.1 X. tropicalis
JGI 4.1 e_gw1.68.240.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000034219 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_680052 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_680022 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_680036 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680128 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680190 X. tropicalis
JGI 4.1 estExt_Genewise1.C_680240 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_68000054 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_68000008 X. tropicalis
JGI 4.1 gw1.68.128.1 X. tropicalis
JGI 4.1 e_gw1.68.128.1 X. tropicalis
JGI 4.1 gw1.68.240.1 X. tropicalis

mRNAs from cDNA libraries (14)

Clone Accession Species Library Anatomy Stage
IMAGE:7624050 BC135884 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas114a06 CR761863 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_001016177 X. tropicalis
XM_012968372 X. tropicalis
AH005463 X. laevis.L
IMAGE:3402294 BC070526 X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
NM_001091486 X. laevis.L
XM_018228840 X. laevis.L
XM_041571994 X. laevis.L
IMAGE:6632834 BC077357 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
L26509 X. laevis.S
NM_001090691 X. laevis.S
XM_018231938 X. laevis.S
Z46972 X. laevis.S

ESTs (202)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7624050 CX401295 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7597567 CX386249 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA026f06 CR577435 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA017o03 CR420345 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA008f18 CR414285 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TNeu102l05 AL805413 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu125b19 AL795139 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu056j13 AL677245 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu013b08 AL643290 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu012n07 AL639745 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st38c21 DC176193 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st38n12 DC176399 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st52g13 DC179585 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7576928 CX422179 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7527578 CX424542 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7524558 CX439281 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542692 CX450178 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7520770 CX468569 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7553501 CX496183 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7546348 CX499632 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7556969 CX504716 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567660 CX508411 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7571576 CX512710 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7605514 DR894020 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
otx2-HAR29 AL629928 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
otx2-HAR31 AL643588 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas035b22 AL654346 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas058a24 AL682211 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas084e23 AL774566 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas080d21 AL774862 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas081e10 AL777334 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas111e19 AL963638 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas114a06 AL965706 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas096d21 AL969562 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas119l09 AL970441 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas142c13 AL971624 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7587651 CX313595 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA034f09 CR582837 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA032a08 CR577929 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7597567 CX386248 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7605514 DR894019 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7624050 DR899455 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst38c21 DC145892 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
THdA026f06 CR577436 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
rst38n12 DC146092 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTbA017o03 CR420346 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
rst52g13 DC149292 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTbA008f18 CR414286 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7524558 CX439280 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu125b19 BX702143 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu102l05 BX694372 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7556969 CX504715 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542692 CX450177 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7576928 CX422178 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas081e10 BX752683 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas119l09 BX752988 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas114a06 BX756561 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7546348 CX499631 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7587651 CX313594 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA034f09 CR582838 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
XL056i07 BJ070421 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:4785401 BI442583 5' X. laevis.L Wellcome CRC pRN3 St19 26 egg animal cap whole organism unfertilized egg stage
IMAGE:7297854 CO390189 5' X. laevis.L Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:3402294 BG037885 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:3402682 BG363999 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6633006 BU907742 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6635175 BU909508 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6865854 CA793802 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6632834 BU907609 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGp998N0214202 BX846483 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGp998H078303 BX846894 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XL147j10 BJ095054 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL167e09 BJ614233 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL169g24 BJ614795 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL177p16 BJ616720 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XENOPUS_SOURCE_ID:xlnga003c15 AW200443 5' X. laevis.L normalized Xenopus laevis gastrula whole organism NF stage 10.5 to NF stage 11.5
IMAGE:3748927 BF614580 5' X. laevis.S Xenopus laevis gastrula non normalized whole organism NF stage 10.5 to NF stage 11.5
XL410b19ex BP672276 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL416h12ex BP674336 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL417o24ex BP674844 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL421k09ex BP676341 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL421m11ex BP676388 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL424g19ex BP676954 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL428o16ex BP678133 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL437e03ex BP681267 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL439m06ex BP682115 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL441n17ex BP683075 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL444d07ex BP683848 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL444d14ex BP683853 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL452n13ex BP686974 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL466h20ex BP691805 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL466p16ex BP691973 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL406c20ex BP692980 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL479f17ex BP696084 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL500k05ex BP701164 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL501k05ex BP701452 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL506o14ex BP703000 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL513m02ex BP705051 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk110k19ex DC039049 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5