Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (536) GO Terms (13) Nucleotides (297) Proteins (54) Interactants (2485) Wiki
XB-GENEPAGE-485219

All X.tropicalis X.laevis.L X.laevis.S

Nucleotide sequences for otx2 - All

Models - Gene (26)
Models - mRNA (28)
Unigene Clusters (4)
Gurdon EST Clusters (3)
mRNAs (14)
ESTs (202)

Models - Gene (26)

Source Version Model Species
NCBI 10.0 XBXT10g018260 X.tropicalis
Xenbase 9.2 gene5497 X.laevis.L
Xenbase 9.2 gene18552 X.laevis.S
Xenbase 9.1 gene5460 X.tropicalis
JGI 9.1 Xelaev18039840m.g X.laevis.L
JGI 9.1 Xelaev18041108m.g X.laevis.S
JGI 7.2 Xelaev16078478m.g X.laevis.L
JGI 7.2 Xelaev16009780m.g X.laevis.S
JGI 7.1 Xetro.H01645 X.tropicalis
JGI 6.0 XeXenL6RMv10032830m.g X.laevis.L
JGI 6.0 XeXenL6RMv10009265m.g X.laevis.S
JGI 4.1 estExt_fgenesh1_pm.C_680022 X.tropicalis
ENSEMBL 4.1 ENSXETG00000015687 X.tropicalis
JGI 4.1 estExt_FilteredModels1.C_680036 X.tropicalis
JGI 4.1 e_gw1.68.128.1 X.tropicalis
JGI 4.1 e_gw1.68.190.1 X.tropicalis
JGI 4.1 e_gw1.68.240.1 X.tropicalis
JGI 4.1 gw1.68.128.1 X.tropicalis
JGI 4.1 gw1.68.190.1 X.tropicalis
JGI 4.1 gw1.68.240.1 X.tropicalis
JGI 4.1 estExt_Genewise1.C_680128 X.tropicalis
JGI 4.1 estExt_Genewise1.C_680190 X.tropicalis
JGI 4.1 estExt_Genewise1.C_680240 X.tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_680052 X.tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_68000008 X.tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_68000054 X.tropicalis

Models - mRNA (28)

Source Version Model Species
NCBI 10.0 mRNA090162 X.tropicalis
Xenbase 9.2 rna16099 X.laevis.L
Xenbase 9.2 rna54170 X.laevis.S
JGI 9.1 Xelaev18039840m X.laevis.L
JGI 9.1 Xelaev18041108m X.laevis.S
Xenbase 9.1 rna17699 X.tropicalis
JGI 7.2 Xelaev16009780m X.laevis.S
JGI 7.2 Xelaev16078478m X.laevis.L
JGI 7.1 Xetro.H01645.2 X.tropicalis
JGI 7.1 Xetro.H01645.3 X.tropicalis
JGI 7.1 Xetro.H01645.1 X.tropicalis
JGI 6.0 XeXenL6RMv10009265m X.laevis.S
JGI 6.0 XeXenL6RMv10032830m X.laevis.L
JGI 4.1 estExt_fgenesh1_pm.C_680022 X.tropicalis
ENSEMBL 4.1 ENSXETT00000034219 X.tropicalis
JGI 4.1 e_gw1.68.128.1 X.tropicalis
JGI 4.1 e_gw1.68.190.1 X.tropicalis
JGI 4.1 e_gw1.68.240.1 X.tropicalis
JGI 4.1 gw1.68.128.1 X.tropicalis
JGI 4.1 gw1.68.190.1 X.tropicalis
JGI 4.1 gw1.68.240.1 X.tropicalis
JGI 4.1 estExt_FilteredModels1.C_680036 X.tropicalis
JGI 4.1 estExt_Genewise1.C_680128 X.tropicalis
JGI 4.1 estExt_Genewise1.C_680190 X.tropicalis
JGI 4.1 estExt_Genewise1.C_680240 X.tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_680052 X.tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_68000008 X.tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_68000054 X.tropicalis

Gurdon EST Clusters (3)

ID Species
1012074782 X.tropicalis
1012769450 X.laevis.L
1012769068 X.laevis.S

mRNAs (14)

Clone Accession Species Library Anatomy Stage
NM_001016177 X.tropicalis
TGas114a06 CR761863 X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7624050 BC135884 X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XM_012968372 X.tropicalis
IMAGE:6632834 BC077357 X.laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:3402294 BC070526 X.laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
Z46972 X.laevis.S
L26509 X.laevis.S
NM_001091486 X.laevis.L
NM_001090691 X.laevis.S
XM_018231938 X.laevis.S
XM_018228840 X.laevis.L
AH005463 X.laevis.L
XM_041571994 X.laevis.L

ESTs (202)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
st52g13 DC179585 5' X.tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st38n12 DC176399 5' X.tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st38c21 DC176193 5' X.tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7624050 CX401295 5' X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7576928 CX422179 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7553501 CX496183 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7546348 CX499632 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7597567 CX386249 5' X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7542692 CX450178 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7571576 CX512710 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567660 CX508411 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7556969 CX504716 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7605514 DR894020 5' X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7520770 CX468569 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7524558 CX439281 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7527578 CX424542 5' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7587651 CX313595 5' X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA034f09 CR582837 5' X.tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA032a08 CR577929 5' X.tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA026f06 CR577435 5' X.tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA017o03 CR420345 5' X.tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA008f18 CR414285 5' X.tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas142c13 AL971624 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas119l09 AL970441 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas096d21 AL969562 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas114a06 AL965706 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas111e19 AL963638 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas081e10 AL777334 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas080d21 AL774862 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
otx2-HAR29 AL629928 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu102l05 AL805413 5' X.tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas035b22 AL654346 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu125b19 AL795139 5' X.tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas084e23 AL774566 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas058a24 AL682211 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu056j13 AL677245 5' X.tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu013b08 AL643290 5' X.tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu012n07 AL639745 5' X.tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
otx2-HAR31 AL643588 5' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
rst38n12 DC146092 3' X.tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst38c21 DC145892 3' X.tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst52g13 DC149292 3' X.tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7576928 CX422178 3' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7542692 CX450177 3' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7624050 DR899455 3' X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7605514 DR894019 3' X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7556969 CX504715 3' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7546348 CX499631 3' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7524558 CX439280 3' X.tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7597567 CX386248 3' X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7587651 CX313594 3' X.tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA034f09 CR582838 3' X.tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA026f06 CR577436 3' X.tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA017o03 CR420346 3' X.tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA008f18 CR414286 3' X.tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas114a06 BX756561 3' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas119l09 BX752988 3' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas081e10 BX752683 3' X.tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu125b19 BX702143 3' X.tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu102l05 BX694372 3' X.tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xl234h01 DC103998 5' X.laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl311p18 DC126624 5' X.laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl304b16 DC124271 5' X.laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl221o24 DC100183 5' X.laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl246i01 DC107717 5' X.laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl282o01 DC118352 5' X.laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl273a17 DC115598 5' X.laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl316p02 DC128077 5' X.laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl320m23 DC129237 5' X.laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk142d21ex DC049215 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk122p01ex DC042960 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk74k14ex DC059225 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk136o14ex DC047489 5' X.laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk135f11ex DC046967 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk8p19ex DC062219 5' X.laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk149o02ex DC051687 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk66n04ex DC056409 5' X.laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk53j13ex DC033603 5' X.laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk53h01ex DC033555 5' X.laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk116o09ex DC040994 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk135b19ex DC046887 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk146p14ex DC050761 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk110k19ex DC039049 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk146f06ex DC050550 5' X.laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8319424 DY573629 5' X.laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8320508 DY570421 5' X.laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8320546 DY569772 5' X.laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8322087 DY567908 5' X.laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8320511 DY562247 5' X.laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8320507 DY562246 5' X.laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8321961 DY559621 5' X.laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7983307 DR724482 5' X.laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7981824 DR716980 5' X.laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL441n17ex BP683075 5' X.laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL458p15ex BP688954 5' X.laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL444d14ex BP683853 5' X.laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL415n21ex BP674133 5' X.laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL406c20ex BP692980 5' X.laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL466p16ex BP691973 5' X.laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5