Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (10) GO Terms (29) Nucleotides (61) Proteins (34) Interactants (99) Wiki
XB-GENEPAGE-485790

Show:     All X. tropicalis X. laevis

Nucleotide sequences for hoxd9 - All

RefSeq mRNAs(3)
Models - Gene (22)
Models - mRNA (22)
mRNAs (5)
ESTs (8)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
XM_012971301 XM_012971301.3 homeobox protein Hox-D9 3473 bp XP_012826755 X. tropicalis
NM_001174043 NM_001174043.1 homeobox D9 S homeolog 2475 bp NP_001167514 X. laevis.S
XM_018235933 XM_018235933.2 homeobox protein Hox-D9 3316 bp XP_018091422 X. laevis.L

Models - Gene (22)

Source Version Model Species
NCBI 10.1 XBXL10_1g43528 X. laevis.S
NCBI 10.1 XBXL10_1g40730 X. laevis.L
NCBI 10.0 XBXT10g014359 X. tropicalis
ENSEMBL 10.0 hoxd9 X. tropicalis
Xenbase 9.2 gene7922 X. laevis.L
Xenbase 9.2 gene3850 X. laevis.S
JGI 9.1 Xelaev18044739m.g X. laevis.L
JGI 9.1 Xelaev18047208m.g X. laevis.S
Xenbase 9.1 gene22742 X. tropicalis
JGI 8.0 Xetrov14037307m.g X. tropicalis
JGI 7.2 Xelaev16053384m.g X. laevis.S
JGI 7.1 Xetro.I00369 X. tropicalis
JGI 6.0 XeXenL6RMv10024617m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000007581 X. tropicalis
JGI 4.1 e_gw1.163.98.1 X. tropicalis
JGI 4.1 e_gw1.163.190.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_163000008 X. tropicalis
JGI 4.1 gw1.163.98.1 X. tropicalis
JGI 4.1 gw1.163.190.1 X. tropicalis
JGI 4.1 gw1.163.141.1 X. tropicalis
JGI 4.1 e_gw1.163.141.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_163000020 X. tropicalis

mRNAs based on gene models(22)

Source Version Model Species
NCBI 10.1 XBmRNA76699 X. laevis.L
NCBI 10.1 XBmRNA81900 X. laevis.S
NCBI 10.0 mRNA071038 X. tropicalis
ENSEMBL 10.0 ENSXETT00000117496 X. tropicalis
Xenbase 9.2 rna23112 X. laevis.L
Xenbase 9.2 rna11228 X. laevis.S
JGI 9.1 Xelaev18044739m X. laevis.L
Xenbase 9.1 rna45889 X. tropicalis
JGI 9.1 Xelaev18047208m X. laevis.S
JGI 8.0 Xetrov14037307m X. tropicalis
JGI 7.2 Xelaev16053384m X. laevis.S
JGI 7.1 Xetro.I00369.1 X. tropicalis
JGI 6.0 XeXenL6RMv10024617m X. laevis.S
ENSEMBL 4.1 ENSXETT00000016495 X. tropicalis
JGI 4.1 e_gw1.163.141.1 X. tropicalis
JGI 4.1 e_gw1.163.98.1 X. tropicalis
JGI 4.1 gw1.163.141.1 X. tropicalis
JGI 4.1 gw1.163.98.1 X. tropicalis
JGI 4.1 gw1.163.190.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_163000008 X. tropicalis
JGI 4.1 e_gw1.163.190.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_163000020 X. tropicalis

mRNAs from cDNA libraries (5)

Clone Accession Species Library Anatomy Stage
XM_012971301 X. tropicalis
AJ314741 X. laevis.S
IMAGE:8318948 BC125988 X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
NM_001174043 X. laevis.S
XM_018235933 X. laevis.L

ESTs (8)

Clone Accession 5'/3' Species Library Anatomy Stage
TTbA045d09 CR416201 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA010e24 CR415267 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:8318948 DY561731 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
xl256l20 DC110790 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL045k22 BJ038857 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL064c18 BJ059880 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL099e23 BJ089629 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL045k22 BJ050801 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15