Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (62) GO Terms (32) Nucleotides (185) Proteins (52) Interactants (503) Wiki
XB-GENEPAGE-486816

Show:     All X. tropicalis X. laevis

Nucleotide sequences for irx1 - All

RefSeq mRNAs(3)
Models - Gene (34)
Models - mRNA (34)
mRNAs (9)
ESTs (87)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001201422 NM_001201422.1 iroquois-class homeodomain protein irx-1 2078 bp NP_001188351 X. tropicalis
NM_001088180 NM_001088180.2 iroquois-class homeodomain protein irx-1-A 2068 bp NP_001081649 X. laevis.L
NM_001096688 NM_001096688.1 iroquois-class homeodomain protein irx-1-B 2056 bp NP_001090157 X. laevis.S

Models - Gene (34)

Source Version Model Species
NCBI 10.1 XBXL10_1g29183 X. laevis.S
NCBI 10.1 XBXL10_1g27429 X. laevis.L
NCBI 10.0 XBXT10g017080 X. tropicalis
ENSEMBL 10.0 irx1 X. tropicalis
Xenbase 9.2 gene15741 X. laevis.L
Xenbase 9.2 gene1998 X. laevis.S
JGI 9.1 Xelaev18031340m.g X. laevis.L
JGI 9.1 Xelaev18033303m.g X. laevis.S
Xenbase 9.1 gene7678 X. tropicalis
ENSEMBL 9.1 irx1 X. tropicalis
JGI 7.2 Xelaev16051393m.g X. laevis.L
JGI 7.2 Xelaev16063330m.g X. laevis.S
JGI 7.1 Xetro.F01165 X. tropicalis
JGI 6.0 XeXenL6RMv10049921m.g X. laevis.L
JGI 6.0 XeXenL6RMv10051574m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000006958 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1310003 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_131000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_131000027 X. tropicalis
JGI 4.1 gw1.131.171.1 X. tropicalis
JGI 4.1 gw1.131.172.1 X. tropicalis
JGI 4.1 gw1.131.5.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1310007 X. tropicalis
JGI 4.1 e_gw1.131.171.1 X. tropicalis
JGI 4.1 e_gw1.131.172.1 X. tropicalis
JGI 4.1 e_gw1.131.5.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1310005 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1310171 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1310172 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1310003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1310026 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1310027 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_131000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_131000026 X. tropicalis

mRNAs based on gene models(34)

Source Version Model Species
NCBI 10.1 XBmRNA54863 X. laevis.S
NCBI 10.1 XBmRNA51442 X. laevis.L
ENSEMBL 10.0 ENSXETT00000062451 X. tropicalis
NCBI 10.0 mRNA084607 X. tropicalis
Xenbase 9.2 rna5810 X. laevis.S
Xenbase 9.2 rna45969 X. laevis.L
Xenbase 9.1 rna24719 X. tropicalis
JGI 9.1 Xelaev18033303m X. laevis.S
JGI 9.1 Xelaev18031340m X. laevis.L
ENSEMBL 9.1 ENSXETT00000062451 X. tropicalis
JGI 7.2 Xelaev16063330m X. laevis.S
JGI 7.2 Xelaev16051393m X. laevis.L
JGI 7.1 Xetro.F01165.1 X. tropicalis
JGI 6.0 XeXenL6RMv10049921m X. laevis.L
JGI 6.0 XeXenL6RMv10051574m X. laevis.S
JGI 4.1 estExt_FilteredModels1.C_1310007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1310003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1310027 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1310026 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1310003 X. tropicalis
JGI 4.1 e_gw1.131.5.1 X. tropicalis
JGI 4.1 e_gw1.131.172.1 X. tropicalis
JGI 4.1 e_gw1.131.171.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000015175 X. tropicalis
JGI 4.1 gw1.131.5.1 X. tropicalis
JGI 4.1 gw1.131.172.1 X. tropicalis
JGI 4.1 gw1.131.171.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_131000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_131000026 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_131000027 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_131000003 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1310172 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1310171 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1310005 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
IMAGE:7799302 BC160569 X. tropicalis NIH_XGC_tropFat1 fat body frog
TNeu022p19 CT485750 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001201422 X. tropicalis
AJ001834 AJ001834 X. laevis.L
IMAGE:9040976 BC169342 X. laevis.L
IMAGE:9040978 BC169344 X. laevis.L
NM_001088180 X. laevis.L
IMAGE:7982871 BC110767 X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
NM_001096688 X. laevis.S

ESTs (87)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7544349 CX460669 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7540545 CX461851 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
st35k15 DC173487 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st39d17 DC176498 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st49a12 DC178824 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st50d24 DC179100 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st62l13 DC182091 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st68p05 DC183672 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st72b05 DC184463 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st113b02 DC194907 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st113n08 DC195107 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7512895 CX741836 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7804374 DR840088 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7799302 DN060443 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7614632 CX391058 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7610797 CX377655 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas017p12 AL629608 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas012c10 AL634040 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas041f11 AL653353 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas126n11 AL972185 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7566227 CX483377 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7545498 CX488322 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu097f10 AL791697 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu093a24 AL781102 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu022p19 AL641827 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu010m05 AL638026 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7566227 CX483376 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7512895 CX741835 3' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7610797 CX377654 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu093a24 BX693127 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
rst113b02 DC165353 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst35k15 DC143251 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst39d17 DC146194 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7804374 DR840087 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
rst113n08 DC165552 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst49a12 DC148550 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst50d24 DC148820 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst62l13 DC151830 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst68p05 DC153473 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst72b05 DC154306 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7540545 CX461850 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7799302 DN060442 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
TGas126n11 BX758204 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7544349 CX460668 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
XL411n04ex BP672778 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:7297562 CO390214 5' X. laevis.L Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:3420567 BG552115 5' X. laevis.L Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
XL141p20 BJ093291 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL168f11 BJ614498 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL174g09 BJ615757 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL176d11 BJ616245 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL191j01 BJ620037 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL219i07 BJ627828 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGp998A168351 BX854866 5' X. laevis.L Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
xl270d18 DC114798 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl286l18 DC119369 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl287l18 DC119674 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl313p01 DC127217 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl315l15 DC127711 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl321p11 DC129579 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk105p05ex DC037526 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk118o15ex DC041622 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk122m15ex DC042911 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk5h06ex DC054361 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk6f15ex DC057521 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
za50e10 AW159040 5' X. laevis.L Xenopus EST library brain NF stage 45 to NF stage 66
xlk6p22ex DC057729 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk76i20ex DC059838 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:7982871 DR724060 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:6938879 CB983675 5' X. laevis.L NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
XL056e13 BJ070340 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxl315l15 DC092582 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl313p01 DC092105 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl287l18 DC084913 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl286l18 DC084632 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL047i19 BJ055127 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
rxlk76i20ex DC026392 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:3420567 BG407985 3' X. laevis.L Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
XL219i07 BJ644117 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL191j01 BJ636663 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL176d11 BJ632823 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL056e13 BJ087375 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL174g09 BJ632375 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL411n04ex BP710794 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL168f11 BJ631184 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL141p20 BJ097501 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
rxl321p11 DC093797 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15