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Summary Expression Phenotypes Gene Literature (1) GO Terms (49) Nucleotides (91) Proteins (56) Interactants (85) Wiki
XB-GENEPAGE-487535

Show:     All X. tropicalis X. laevis

Nucleotide sequences for nphp4.2 - All

RefSeq mRNAs(6)
Models - Gene (25)
Models - mRNA (35)
mRNAs (7)
ESTs (4)

RefSeq mRNAs (6)

Accession Version Protein Name Length Protein Species
NM_001100238 NM_001100238.1 nephronophthisis 4, gene 2 1797 bp NP_001093708 X. tropicalis
XM_018226109 XM_018226109.2 nephrocystin-4-like isoform X1 5256 bp XP_018081598 X. laevis.L
XM_018226110 XM_018226110.2 nephrocystin-4-like isoform X2 5253 bp XP_018081599 X. laevis.L
XM_018226111 XM_018226111.2 nephrocystin-4-like isoform X3 5249 bp XP_018081600 X. laevis.L
XM_018226112 XM_018226112.2 nephrocystin-4-like isoform X3 5252 bp XP_018081601 X. laevis.L
XM_018226113 XM_018226113.2 nephrocystin-4-like isoform X3 5220 bp XP_018081602 X. laevis.L

Models - Gene (25)

Source Version Model Species
NCBI 10.1 XBXL10_1g31396 X. laevis.L
NCBI 10.0 XBXT10g009747 X. tropicalis
ENSEMBL 10.0 nphp4.2 X. tropicalis
Xenbase 9.2 gene2672 X. laevis.L
JGI 9.1 Xelaev18035765m.g X. laevis.L
Xenbase 9.1 gene28664 X. tropicalis
ENSEMBL 9.1 nphp4.2 X. tropicalis
JGI 7.1 Xetro.G01614 X. tropicalis
JGI 6.0 XeXenL6RMv10001217m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000002886 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3000002 X. tropicalis
JGI 4.1 C_scaffold_300000002 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3000051 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_300000013 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3000034 X. tropicalis
JGI 4.1 e_gw1.300.2.1 X. tropicalis
JGI 4.1 e_gw1.300.34.1 X. tropicalis
JGI 4.1 e_gw1.300.51.1 X. tropicalis
JGI 4.1 e_gw1.300.56.1 X. tropicalis
JGI 4.1 gw1.300.2.1 X. tropicalis
JGI 4.1 gw1.300.34.1 X. tropicalis
JGI 4.1 gw1.300.56.1 X. tropicalis
JGI 4.1 gw1.300.51.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3000006 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.1 XBmRNA59346 X. laevis.L
NCBI 10.0 mRNA048215 X. tropicalis
ENSEMBL 10.0 ENSXETT00000103742 X. tropicalis
ENSEMBL 10.0 ENSXETT00000060436 X. tropicalis
ENSEMBL 10.0 ENSXETT00000006319 X. tropicalis
Xenbase 9.2 rna7758 X. laevis.L
Xenbase 9.1 rna55469 X. tropicalis
ENSEMBL 9.1 ENSXETT00000060265 X. tropicalis
ENSEMBL 9.1 ENSXETT00000060436 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068684 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068811 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079596 X. tropicalis
ENSEMBL 9.1 ENSXETT00000103742 X. tropicalis
JGI 9.1 Xelaev18035765m X. laevis.L
ENSEMBL 9.1 ENSXETT00000006319 X. tropicalis
JGI 7.1 Xetro.G01614.2 X. tropicalis
JGI 7.1 Xetro.G01614.3 X. tropicalis
JGI 7.1 Xetro.G01614.1 X. tropicalis
JGI 6.0 XeXenL6RMv10001217m X. laevis.L
JGI 4.1 estExt_FilteredModels1.C_3000006 X. tropicalis
JGI 4.1 e_gw1.300.2.1 X. tropicalis
JGI 4.1 e_gw1.300.34.1 X. tropicalis
JGI 4.1 e_gw1.300.51.1 X. tropicalis
JGI 4.1 e_gw1.300.56.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000006319 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_3000013 X. tropicalis
JGI 4.1 C_scaffold_300000002 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3000002 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3000034 X. tropicalis
JGI 4.1 estExt_Genewise1.C_3000051 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_300000013 X. tropicalis
JGI 4.1 gw1.300.2.1 X. tropicalis
JGI 4.1 gw1.300.34.1 X. tropicalis
JGI 4.1 gw1.300.51.1 X. tropicalis
JGI 4.1 gw1.300.56.1 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
IMAGE:7619181 BC135555 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
NM_001100238 X. tropicalis
XM_018226109 X. laevis.L
XM_018226110 X. laevis.L
XM_018226111 X. laevis.L
XM_018226112 X. laevis.L
XM_018226113 X. laevis.L

ESTs (4)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7619181 CX346126 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7466653 CV814303 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:7619181 CX346125 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8531427 EB466410 5' X. laevis.L NICHD_XGC_limb_m limb NF stage 54 to NF stage 61