Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (41) GO Terms (25) Nucleotides (129) Proteins (45) Interactants (553) Wiki
XB-GENEPAGE-490623

Show:     All X. tropicalis X. laevis

Nucleotide sequences for brca1 - All

RefSeq mRNAs(3)
Models - Gene (22)
Models - mRNA (27)
mRNAs (9)
ESTs (40)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001114491 NM_001114491.1 breast cancer type 1 susceptibility protein 6466 bp NP_001107963 X. tropicalis
XM_012952508 XM_012952508.3 breast cancer type 1 susceptibility protein isoform X1 6473 bp XP_012807962 X. tropicalis
NM_001090779 NM_001090779.1 breast cancer 1 L homeolog 6177 bp NP_001084248 X. laevis.L

Models - Gene (22)

Source Version Model Species
NCBI 10.1 XBXL10_1g39818 X. laevis.L
NCBI 10.0 XBXT10g005488 X. tropicalis
ENSEMBL 10.0 brca1 X. tropicalis
Xenbase 9.2 gene6724 X. laevis.L
JGI 9.1 Xelaev18043845m.g X. laevis.L
Xenbase 9.1 gene26400 X. tropicalis
ENSEMBL 9.1 brca1 X. tropicalis
JGI 8.0 Xetrov14040846m.g X. tropicalis
JGI 7.2 Xelaev16046970m.g X. laevis.L
JGI 7.1 Xetro.J00669 X. tropicalis
JGI 6.0 XeXenL6RMv10007954m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000024564 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290475 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290349 X. tropicalis
JGI 4.1 gw1.29.475.1 X. tropicalis
JGI 4.1 gw1.29.349.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_29000123 X. tropicalis
JGI 4.1 e_gw1.29.475.1 X. tropicalis
JGI 4.1 e_gw1.29.349.1 X. tropicalis
JGI 4.1 e_gw1.29.140.1 X. tropicalis
JGI 4.1 gw1.29.140.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_29000033 X. tropicalis

mRNAs based on gene models(27)

Source Version Model Species
NCBI 10.1 XBmRNA74922 X. laevis.L
NCBI 10.0 mRNA027259 X. tropicalis
ENSEMBL 10.0 ENSXETT00000021462 X. tropicalis
ENSEMBL 10.0 ENSXETT00000064158 X. tropicalis
Xenbase 9.2 rna19687 X. laevis.L
ENSEMBL 9.1 ENSXETT00000021462 X. tropicalis
Xenbase 9.1 rna51790 X. tropicalis
JGI 9.1 Xelaev18043845m X. laevis.L
ENSEMBL 9.1 ENSXETT00000064158 X. tropicalis
ENSEMBL 9.1 ENSXETT00000069886 X. tropicalis
JGI 8.0 Xetrov14040846m X. tropicalis
JGI 7.2 Xelaev16046970m X. laevis.L
JGI 7.1 Xetro.J00669.3 X. tropicalis
JGI 7.1 Xetro.J00669.2 X. tropicalis
JGI 7.1 Xetro.J00669.1 X. tropicalis
JGI 6.0 XeXenL6RMv10007954m X. laevis.L
JGI 4.1 gw1.29.140.1 X. tropicalis
JGI 4.1 e_gw1.29.349.1 X. tropicalis
JGI 4.1 e_gw1.29.475.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000021462 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290349 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290475 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_29000123 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_29000033 X. tropicalis
JGI 4.1 e_gw1.29.140.1 X. tropicalis
JGI 4.1 gw1.29.349.1 X. tropicalis
JGI 4.1 gw1.29.475.1 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
IMAGE:7684550 BC159159 X. tropicalis
TEgg011f05 CR760703 X. tropicalis
TEgg011f09 CU024919 X. tropicalis
NM_001114491 X. tropicalis
XM_012952508 X. tropicalis
AF416868 X. laevis.L
IMAGE:9093522 BC170141 X. laevis.L
NM_001090779 X. laevis.L
XR_001933029 X. laevis.L

ESTs (40)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas061g13 AL682329 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:6988621 CF220176 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
xthr04M21 CN117639 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TNeu024o14 AL642345 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu017f10 AL645314 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu047e04 AL659507 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu083k21 AL781558 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA035a13 CR429849 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA008f04 CR560431 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA049h11 CR585183 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA047h11 BX730809 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7594890 CX332189 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7615272 CX391687 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7616120 CX392725 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7694918 CX923578 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7569461 CX453091 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7558301 CX497199 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTpA047h11 BX730810 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7594890 CX332188 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7558301 CX497198 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA049h11 CR585184 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7616120 CX392724 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu083k21 BX692403 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7694918 CX923577 3' X. tropicalis NIH_XGC_tropTe4 testis frog
xthr04M21 CN117638 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TGas117m04 BX762895 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA008f04 CR560432 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:3436828 BF613367 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
IMAGp998G058393 BX850833 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
PBX0042G04 AW636096 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:5155778 CA792877 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
XL144a18 BJ093971 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL207j09 BJ624193 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL485j04ex BP698707 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk149a14ex DC051427 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:5570814 BQ735348 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL094c02 BJ071352 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL207j09 BJ640760 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL094c02 BJ091101 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL485j04ex BP731731 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5