Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (7) GO Terms (24) Nucleotides (153) Proteins (26) Interactants (105) Wiki
XB-GENEPAGE-494959

Show:     All X. tropicalis X. laevis

Nucleotide sequences for sdc1 - All

RefSeq mRNAs(5)
Models - Gene (15)
Models - mRNA (15)
mRNAs (7)
ESTs (59)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
XM_031902967 XM_031902967.1 XP_031758827.1 syndecan-1 4192 bp XP_031758827 X. tropicalis
XM_018264044 XM_018264044.2 syndecan-3 4905 bp XP_018119533 X. laevis.L
XM_018265958 XM_018265958.2 syndecan-3 isoform X1 2997 bp XP_018121447 X. laevis.S
XM_018265958 syndecan-3 isoform X1 2997 bp XP_018121447 X. laevis.S
XM_041565065 XM_041565065.1 XP_041420999.1 syndecan-3 isoform X2 2884 bp XP_041420999 X. laevis.S

Models - Gene (15)

Source Version Model Species
NCBI 10.1 XBXL10_1g24440 X. laevis.L
NCBI 10.0 XBXT10g014477 X. tropicalis
NCBI 10.1 XBXL10_1g26209 X. laevis.S
ENSEMBL 10.0 sdc1 X. tropicalis
Xenbase 9.2 gene15727 X. laevis.L
JGI 9.1 Xelaev18028097m.g X. laevis.L
Xenbase 9.1 gene28582 X. tropicalis
JGI 7.2 Xelaev16078989m.g X. laevis.L
JGI 7.1 Xetro.I02059 X. tropicalis
JGI 6.0 XeXenL6RMv10028483m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000008902 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_100000007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1000036 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1000021 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1000157 X. tropicalis

mRNAs based on gene models(15)

Source Version Model Species
NCBI 10.1 XBmRNA49014 X. laevis.S
NCBI 10.1 XBmRNA45737 X. laevis.L
ENSEMBL 10.0 ENSXETT00000113617 X. tropicalis
NCBI 10.0 mRNA071602 X. tropicalis
Xenbase 9.2 rna45927 X. laevis.L
Xenbase 9.1 rna55303 X. tropicalis
JGI 9.1 Xelaev18028097m X. laevis.L
JGI 7.2 Xelaev16078989m X. laevis.L
JGI 7.1 Xetro.I02059.1 X. tropicalis
JGI 6.0 XeXenL6RMv10028483m X. laevis.L
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_100000007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1000036 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1000021 X. tropicalis
ENSEMBL 4.1 ENSXETT00000019527 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1000157 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
TEgg043e17 CR848519 X. tropicalis
XM_031902967 X. tropicalis
U41628 X. laevis.L
XM_018264044 X. laevis.L
XM_018265958 X. laevis.S
XM_018265958 X. laevis.S
XM_041565065 X. laevis.S

ESTs (59)

Clone Accession 5'/3' Species Library Anatomy Stage
TTbA005l13 CR415172 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7698320 CX930687 5' X. tropicalis NIH_XGC_tropTe5 testis frog
TGas062l18 AL681324 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas138m01 AL966596 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7634402 CX337887 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7529331 CX425953 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7611220 CX378382 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7533394 CX434838 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7527071 CX444461 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA070k10 CR422159 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7544315 CX460113 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7625743 CX378887 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu066k14 AL783698 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
st72l04 DC184616 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st3h13 DC173994 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7627057 CX380692 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8961166 EL659515 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:8922809 EL671725 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8961314 EL656752 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:7596563 CX337065 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
CAAO5566 CX937609 5' X. tropicalis NIH_XGC_tropTe5 testis frog
rst3h13 DC143713 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTbA005l13 CR415173 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA070k10 CR422160 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA014n11 CR428097 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7634402 CX337886 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7625743 CX378886 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7627057 CX380691 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611220 DR895826 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8922809 EL671724 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
CAAO5566 CX937608 3' X. tropicalis NIH_XGC_tropTe5 testis frog
TGas138m01 BX757471 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7533394 CX434837 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7544315 CX460112 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
rst8d21 DC145046 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TNeu066k14 BX687454 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
PBX0117H07 AW642451 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XENOPUS_SOURCE_ID:xlnoc002d09 AW199583 5' X. laevis.L Xenopus laevis oocyte oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
za63c12 AW159307 5' X. laevis.L Xenopus EST library brain NF stage 45 to NF stage 66
PBX0007E03 AW633419 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0102F01 AW641120 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:6869326 CA984955 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:6865537 CA793609 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6863361 CA986842 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
XL178o22 BJ616973 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL201c03 BJ622480 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL212a17 BJ625586 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL217l09 BJ627325 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
xlk56n07ex DC034645 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL020j21 BJ033385 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:5537003 BQ731334 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGp998J1212227 BX849799 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:8530565 EB463256 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
XENOPUS_SOURCE_ID:xlnoc002d09 AW147828 3' X. laevis.L Xenopus laevis oocyte oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
XL217l09 BJ643629 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL212a17 BJ642012 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL201c03 BJ639156 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL178o22 BJ633477 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL020j21 BJ048680 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15