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Summary Expression Phenotypes Gene Literature (139) GO Terms (80) Nucleotides (146) Proteins (59) Interactants (533) Wiki
XB-GENEPAGE-495447

Show:     All X. tropicalis X. laevis

Nucleotide sequences for clock - All

RefSeq mRNAs(7)
Models - Gene (29)
Models - mRNA (42)
mRNAs (11)
ESTs (32)

RefSeq mRNAs (7)

Accession Version Protein Name Length Protein Species
NM_001128655 NM_001128655.1 circadian locomoter output cycles protein kaput 5308 bp NP_001122127 X. tropicalis
NM_001090385 NM_001090385.2 clock circadian regulator L homeolog 3108 bp NP_001083854 X. laevis.L
XM_041575932 XM_041575932.1 XP_041431866.1 clock circadian regulator L homeolog isoform X1 3560 bp XP_041431866 X. laevis.L
XM_041575979 XM_041575979.1 XP_041431913.1 clock circadian regulator L homeolog isoform X1 3549 bp XP_041431913 X. laevis.L
XM_041576021 XM_041576021.1 XP_041431955.1 clock circadian regulator L homeolog isoform X2 3370 bp XP_041431955 X. laevis.L
XM_018243149 XM_018243149.2 circadian locomoter output cycles protein kaput 4940 bp XP_018098638 X. laevis.S
XM_018243150 XM_018243150.2 circadian locomoter output cycles protein kaput 4782 bp XP_018098639 X. laevis.S

Models - Gene (29)

Source Version Model Species
NCBI 10.1 XBXL10_1g820 X. laevis.L
NCBI 10.1 XBXL10_1g3805 X. laevis.S
NCBI 10.0 XBXT10g001978 X. tropicalis
ENSEMBL 10.0 clock X. tropicalis
Xenbase 9.2 gene1574 X. laevis.S
Xenbase 9.2 gene43542 X. laevis.L
JGI 9.1 Xelaev18005292m.g X. laevis.L
JGI 9.1 Xelaev18009071m.g X. laevis.S
Xenbase 9.1 gene18102 X. tropicalis
ENSEMBL 9.1 clock X. tropicalis
JGI 8.0 Xetrov14005064m.g X. tropicalis
JGI 7.2 Xelaev16043339m.g X. laevis.L
JGI 7.1 Xetro.A03039 X. tropicalis
JGI 6.0 XeXenL6RMv10037759m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000021064 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_107000010 X. tropicalis
JGI 4.1 e_gw1.107.102.1 X. tropicalis
JGI 4.1 e_gw1.107.104.1 X. tropicalis
JGI 4.1 e_gw1.107.126.1 X. tropicalis
JGI 4.1 gw1.107.102.1 X. tropicalis
JGI 4.1 gw1.107.104.1 X. tropicalis
JGI 4.1 gw1.107.126.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1070015 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1070102 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1070104 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1070126 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1070037 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_107000038 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1070010 X. tropicalis

mRNAs based on gene models(42)

Source Version Model Species
NCBI 10.1 XBmRNA1188 X. laevis.L
NCBI 10.1 XBmRNA6954 X. laevis.S
ENSEMBL 10.0 ENSXETT00000089732 X. tropicalis
ENSEMBL 10.0 ENSXETT00000093056 X. tropicalis
NCBI 10.0 mRNA009919 X. tropicalis
ENSEMBL 10.0 ENSXETT00000045528 X. tropicalis
ENSEMBL 10.0 ENSXETT00000079049 X. tropicalis
Xenbase 9.2 rna86998 X. laevis.L
Xenbase 9.2 rna4598 X. laevis.S
ENSEMBL 9.1 ENSXETT00000095500 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079049 X. tropicalis
ENSEMBL 9.1 ENSXETT00000045528 X. tropicalis
ENSEMBL 9.1 ENSXETT00000045529 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068956 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079268 X. tropicalis
ENSEMBL 9.1 ENSXETT00000083742 X. tropicalis
ENSEMBL 9.1 ENSXETT00000089732 X. tropicalis
ENSEMBL 9.1 ENSXETT00000093056 X. tropicalis
ENSEMBL 9.1 ENSXETT00000095305 X. tropicalis
Xenbase 9.1 rna38645 X. tropicalis
JGI 9.1 Xelaev18005292m X. laevis.L
JGI 9.1 Xelaev18009071m X. laevis.S
JGI 8.0 Xetrov14005064m X. tropicalis
JGI 7.2 Xelaev16043339m X. laevis.L
JGI 7.1 Xetro.A03039.1 X. tropicalis
JGI 6.0 XeXenL6RMv10037759m X. laevis.L
JGI 4.1 fgenesh1_pm.C_scaffold_107000010 X. tropicalis
JGI 4.1 gw1.107.102.1 X. tropicalis
JGI 4.1 gw1.107.104.1 X. tropicalis
JGI 4.1 gw1.107.126.1 X. tropicalis
JGI 4.1 e_gw1.107.102.1 X. tropicalis
JGI 4.1 e_gw1.107.126.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000045529 X. tropicalis
ENSEMBL 4.1 ENSXETT00000045528 X. tropicalis
JGI 4.1 e_gw1.107.104.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1070037 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1070010 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1070102 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1070015 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1070104 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1070126 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_107000038 X. tropicalis

mRNAs from cDNA libraries (11)

Clone Accession Species Library Anatomy Stage
IMAGE:7871397 BC167652 X. tropicalis
TGas129b02 CR760751 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_001128655 X. tropicalis
AF203107 X. laevis.L
AF227985 X. laevis.L
NM_001090385 X. laevis.L
XM_041575932 X. laevis.L
XM_041575979 X. laevis.L
XM_041576021 X. laevis.L
XM_018243149 X. laevis.S
XM_018243150 X. laevis.S

ESTs (32)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8857855 EL821413 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8935737 EL637212 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:7593655 CX330224 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7800856 DR833971 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7692721 CX919027 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7660089 CX840244 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7655100 CX825315 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7653085 CX821380 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
TGas129b02 AL961619 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7540656 CX462289 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7018095 CF523719 5' X. tropicalis NICHD_XGC_Swb1 whole organism frog
IMAGE:8864156 EL700823 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
THdA045l06 CR584938 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8857855 EL821414 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
THdA045l06 CR584939 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7593655 CX330223 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7653085 CX821379 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7655100 CX825314 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7660089 CX840243 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7692721 CX919026 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7800856 DR833970 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8935737 EL637211 3' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
XL141j16 BJ093164 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL158i02 BJ612246 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL157i02 BJ612048 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
xl303n21 DC124196 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL153l21 BJ096381 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL188d03 BJ619140 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL141j16 BJ097413 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL148j04 BJ098944 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL188d03 BJ635777 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
rxl303n21 DC089310 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15