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Summary Expression Phenotypes Gene Literature (28) GO Terms (35) Nucleotides (241) Proteins (61) Interactants (175) Wiki
XB-GENEPAGE-5788003

Show:     All X. tropicalis X. laevis

Nucleotide sequences for lig3 - All

RefSeq mRNAs(4)
Models - Gene (27)
Models - mRNA (39)
mRNAs (11)
ESTs (132)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001016351 NM_001016351.3 DNA ligase 3 2818 bp NP_001016351 X. tropicalis
XM_012971764 XM_012971764.3 DNA ligase 3 isoform X1 4015 bp XP_012827218 X. tropicalis
XM_012971765 XM_012971765.3 DNA ligase 3 isoform X1 3962 bp XP_012827219 X. tropicalis
NM_001088714 NM_001088714.1 ligase III, DNA, ATP-dependent L homeolog 4758 bp NP_001082183 X. laevis.L

Models - Gene (27)

Source Version Model Species
NCBI 10.1 XBXL10_1g39714 X. laevis.L
NCBI 10.0 XBXT10g005352 X. tropicalis
ENSEMBL 10.0 lig3 X. tropicalis
Xenbase 9.2 gene13209 X. laevis.L
JGI 9.1 Xelaev18043734m.g X. laevis.L
Xenbase 9.1 gene5890 X. tropicalis
ENSEMBL 9.1 lig3 X. tropicalis
JGI 8.0 Xetrov14040753m.g X. tropicalis
JGI 7.2 Xelaev16014864m.g X. laevis.L
JGI 7.1 Xetro.J00433 X. tropicalis
JGI 6.0 XeXenL6RMv10001947m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000019634 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_282000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_282000015 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_282000004 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2820014 X. tropicalis
JGI 4.1 e_gw1.282.108.1 X. tropicalis
JGI 4.1 e_gw1.282.109.1 X. tropicalis
JGI 4.1 e_gw1.282.110.1 X. tropicalis
JGI 4.1 gw1.282.108.1 X. tropicalis
JGI 4.1 gw1.282.109.1 X. tropicalis
JGI 4.1 gw1.282.110.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2820009 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2820108 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2820109 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2820110 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2820003 X. tropicalis

mRNAs based on gene models(39)

Source Version Model Species
NCBI 10.1 XBmRNA74705 X. laevis.L
NCBI 10.0 mRNA026607 X. tropicalis
ENSEMBL 10.0 ENSXETT00000087495 X. tropicalis
ENSEMBL 10.0 ENSXETT00000082553 X. tropicalis
ENSEMBL 10.0 ENSXETT00000042517 X. tropicalis
Xenbase 9.2 rna38439 X. laevis.L
ENSEMBL 9.1 ENSXETT00000084918 X. tropicalis
ENSEMBL 9.1 ENSXETT00000086374 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087495 X. tropicalis
ENSEMBL 9.1 ENSXETT00000090476 X. tropicalis
ENSEMBL 9.1 ENSXETT00000042517 X. tropicalis
Xenbase 9.1 rna19035 X. tropicalis
JGI 9.1 Xelaev18043734m X. laevis.L
ENSEMBL 9.1 ENSXETT00000068252 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079671 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082553 X. tropicalis
JGI 8.0 Xetrov14040753m X. tropicalis
JGI 7.2 Xelaev16014864m X. laevis.L
JGI 7.1 Xetro.J00433.2 X. tropicalis
JGI 7.1 Xetro.J00433.3 X. tropicalis
JGI 7.1 Xetro.J00433.1 X. tropicalis
JGI 6.0 XeXenL6RMv10001947m X. laevis.L
JGI 4.1 estExt_Genewise1.C_2820108 X. tropicalis
JGI 4.1 e_gw1.282.109.1 X. tropicalis
JGI 4.1 e_gw1.282.110.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000042517 X. tropicalis
ENSEMBL 4.1 ENSXETT00000042522 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2820014 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2820003 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2820009 X. tropicalis
JGI 4.1 e_gw1.282.108.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2820109 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2820110 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_282000015 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_282000004 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_282000002 X. tropicalis
JGI 4.1 gw1.282.108.1 X. tropicalis
JGI 4.1 gw1.282.109.1 X. tropicalis
JGI 4.1 gw1.282.110.1 X. tropicalis

mRNAs from cDNA libraries (11)

Clone Accession Species Library Anatomy Stage
IMAGE:7798551 BC167946 X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:9040452 BC171190 X. tropicalis
IMAGE:9040454 BC171192 X. tropicalis
TEgg059j05 CR761336 X. tropicalis
NM_001016351 X. tropicalis
XM_012971764 X. tropicalis
XM_012971765 X. tropicalis
AF393654 X. laevis.L
AF393655 X. laevis.L
IMAGE:3400226 BC070993 X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
NM_001088714 X. laevis.L

ESTs (132)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu084c06 AL804039 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu102d21 AL805377 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7787248 CX329537 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTpA049o17 BX727618 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7596150 CX336407 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7585409 CX317856 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xtbs28G16 CN087241 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7585464 CX318800 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7643494 CX799354 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7610405 DR895437 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:5383051 BQ394702 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7531074 CX420901 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7655827 CX826441 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
CAAN11876 CX928098 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:9019436 EL868350 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7670798 CX878627 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7575901 CX431059 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7525318 CX442793 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7622569 DR899024 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTbA006h05 CR414169 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA047n07 CR417403 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:9018259 EL866519 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
THdA050i21 CR578391 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA058i18 BX731616 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
THdA034j13 CR582873 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8915036 EL827869 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
THdA041e24 CR586255 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7527222 CX444689 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas004k02 AL593985 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7568080 CX455887 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7734172 DN018969 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7661087 CX842306 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7548916 CX491220 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTpA016f03 BX713987 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA067c16 BX721824 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7554480 CX493553 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
CAAN12135 CX928581 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7798551 DN059202 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
TGas079j16 AL774661 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu065p13 AL777616 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu089e06 AL785216 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu126p11 AL795573 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu129a08 AL797777 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu100b19 AL803133 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu095h09 AL803430 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTpA016f03 BX713988 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA067c16 BX721825 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA049o17 BX727619 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA058i18 BX731617 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7787248 CX329536 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7596150 CX336406 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7622569 CX371350 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7610405 DR895436 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7554480 CX493552 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7661087 CX842305 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7659909 CX839633 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7798551 DN059201 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
xtbs28G16 CN087240 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7643494 CX799353 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7655827 CX826440 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:9019436 EL868351 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8915036 EL827870 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7734172 DN018968 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
CAAN12135 CX928580 3' X. tropicalis NIH_XGC_tropTe4 testis frog
TNeu065p13 BX686230 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu084c06 BX692541 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu089e06 BX693744 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu102d21 BX694578 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu126p11 BX697552 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu111a18 BX699355 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7531074 CX420900 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:5383051 BQ394701 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7575901 CX431058 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
CAAN11876 CX928097 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7527222 CX444688 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA047n07 CR417404 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA050i21 CR578392 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA034j13 CR582874 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7568080 CX455886 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7548916 CX491219 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
XL509l06ex BP703786 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL160b07 BJ612672 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL169a20 BJ614689 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL170c15 BJ614975 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL176j16 BJ616366 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL210f14 BJ625039 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
xl282k09 DC118286 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl331g10 DC132473 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL442a24ex BP683134 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL506e22ex BP702810 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:3473083 BI444622 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
XL509m07ex BP703806 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk56m02ex DC034621 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:4085244 BG893252 5' X. laevis.L Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21
XL010c04 BJ028739 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL043j01 BJ038473 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3199498 AW767038 5' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23
IMAGE:3548790 BF615830 5' X. laevis.L Wellcome CRC pRN3 St19 26 whole organism NF stage 19 to NF stage 26
IMAGE:3400226 BG037348 5' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25