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Summary Expression Phenotypes Gene Literature (1) GO Terms (22) Nucleotides (136) Proteins (31) Interactants (83) Wiki
XB-GENEPAGE-5813157

Show:     All X. tropicalis X. laevis

Nucleotide sequences for trim39 - All

RefSeq mRNAs(5)
Models - Gene (21)
Models - mRNA (21)
mRNAs (7)
ESTs (49)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_001091577 NM_001091577.1 tripartite motif containing 39 L homeolog 3251 bp NP_001085046 X. laevis.L
XM_018244996 XM_018244996.2 tripartite motif containing 39 L homeolog isoform X1 1994 bp XP_018100485 X. laevis.L
XM_018244997 XM_018244997.2 tripartite motif containing 39 L homeolog isoform X2 3336 bp XP_018100486 X. laevis.L
XM_018244999 XM_018244999.2 tripartite motif containing 39 L homeolog isoform X2 2023 bp XP_018100488 X. laevis.L
XM_041580953 XM_041580953.1 XP_041436887.1 tripartite motif containing 39 L homeolog isoform X2 1862 bp XP_041436887 X. laevis.L

Models - Gene (21)

Source Version Model Species
NCBI 10.1 XBXL10_1g8199 X. laevis.L
JGI 7.1 Xetro.B01455 X. tropicalis
Xenbase 9.2 gene5451 X. laevis.L
JGI 9.1 Xelaev18013508m.g X. laevis.L
JGI 7.2 Xelaev16009632m.g X. laevis.L
JGI 6.0 XeXenL6RMv10050126m.g X. laevis.L
JGI 4.1 gw1.67.23.1 X. tropicalis
JGI 4.1 gw1.67.212.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670023 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_67000108 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670209 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_670032 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_670108 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_67000018 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_67000032 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670174 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_670071 X. tropicalis
JGI 4.1 e_gw1.67.177.1 X. tropicalis
JGI 4.1 e_gw1.67.212.1 X. tropicalis
JGI 4.1 e_gw1.67.23.1 X. tropicalis
JGI 4.1 gw1.67.177.1 X. tropicalis

mRNAs based on gene models(21)

Source Version Model Species
NCBI 10.1 XBmRNA15504 X. laevis.L
Xenbase 9.2 rna15979 X. laevis.L
JGI 9.1 Xelaev18013508m X. laevis.L
JGI 7.2 Xelaev16009632m X. laevis.L
JGI 7.1 Xetro.B01455.1 X. tropicalis
JGI 6.0 XeXenL6RMv10050126m X. laevis.L
JGI 4.1 fgenesh1_pg.C_scaffold_67000108 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_67000032 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670209 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670174 X. tropicalis
JGI 4.1 estExt_Genewise1.C_670023 X. tropicalis
JGI 4.1 gw1.67.23.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_670108 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_670032 X. tropicalis
JGI 4.1 e_gw1.67.23.1 X. tropicalis
JGI 4.1 e_gw1.67.212.1 X. tropicalis
JGI 4.1 e_gw1.67.177.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_670071 X. tropicalis
JGI 4.1 gw1.67.212.1 X. tropicalis
JGI 4.1 gw1.67.177.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_67000018 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
NM_001130317 X. tropicalis
IMAGE:3402298 BC070974 X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
NM_001091577 X. laevis.L
XM_018244996 X. laevis.L
XM_018244997 X. laevis.L
XM_018244999 X. laevis.L
XM_041580953 X. laevis.L

ESTs (49)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8922214 EL836743 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7463064 CV632808 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:8859009 EL823192 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8853697 EL815331 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8858050 EL821711 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
TGas075h24 AL778203 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas091h24 AL964054 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8918155 EL831830 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7653027 CX821300 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7618083 CX362882 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7698476 CX930776 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7614315 CX390042 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7806123 DR842318 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8924099 EL668926 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
TGas091h24 BX764438 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8853697 EL815332 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8922214 EL836744 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7653027 CX821299 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7698476 CX930775 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7806123 DR842317 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8859009 EL823193 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8858050 EL821712 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
XL039k09 BJ037170 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
PBX0121B09 AW642755 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3402298 BG037887 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6633296 BU907977 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
XL142n03 BJ093562 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL142n04 BJ093563 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL146k02 BJ094788 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL159f22 BJ612489 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL165h08 BJ613851 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL207b07 BJ624055 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL214h20 BJ626319 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL219p15 BJ627956 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL428c11ex BP677878 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
PBX0026B01 AW634875 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL051l14 BJ069085 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL091a10 BJ070592 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL219p15 BJ644235 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL214h20 BJ642707 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL207b07 BJ640641 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL165h08 BJ630487 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL142n04 BJ097744 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL142n03 BJ097743 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL141p13 BJ097495 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL051l14 BJ086000 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL091a10 BJ087858 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL039k09 BJ053635 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL428c11ex BP714950 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5