Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (8) GO Terms (24) Nucleotides (309) Proteins (51) Interactants (282) Wiki
XB-GENEPAGE-980567

Show:     All X. tropicalis X. laevis

Nucleotide sequences for atrx - All

RefSeq mRNAs(5)
Models - Gene (25)
Models - mRNA (40)
mRNAs (10)
ESTs (164)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
XM_002931812 XM_002931812.5 transcriptional regulator ATRX isoform X1 11865 bp XP_002931858 X. tropicalis
XM_004915742 XM_004915742.4 transcriptional regulator ATRX isoform X2 11628 bp XP_004915799 X. tropicalis
XM_018229764 XM_018229764.2 transcriptional regulator ATRX isoform X1 12231 bp XP_018085253 X. laevis.L
XM_041572697 XM_041572697.1 XP_041428631.1 transcriptional regulator ATRX isoform X2 11752 bp XP_041428631 X. laevis.L
XM_041574678 XM_041574678.1 XP_041430612.1 LOW QUALITY PROTEIN: transcriptional regulator ATRX-like 8202 bp XP_041430612 X. laevis.S

Models - Gene (25)

Source Version Model Species
NCBI 10.1 XBXL10_1g34988 X. laevis.L
NCBI 10.1 XBXL10_1g37918 X. laevis.S
NCBI 10.0 XBXT10g007766 X. tropicalis
ENSEMBL 10.0 cox17 X. tropicalis
Xenbase 9.2 gene42048 X. laevis.L
JGI 9.1 Xelaev18042018m.g X. laevis.S
JGI 9.1 Xelaev18038687m.g X. laevis.L
Xenbase 9.1 gene3314 X. tropicalis
ENSEMBL 9.1 atrx X. tropicalis
JGI 8.0 Xetrov14033068m.g X. tropicalis
JGI 7.2 Xelaev16048054m.g X. laevis.L
JGI 7.1 Xetro.G00109 X. tropicalis
JGI 6.0 XeXenL6RMv10054493m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000004499 X. tropicalis
JGI 4.1 estExt_Genewise1.C_100080 X. tropicalis
JGI 4.1 estExt_Genewise1.C_100079 X. tropicalis
JGI 4.1 estExt_Genewise1.C_100078 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_100077 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_10000145 X. tropicalis
JGI 4.1 gw1.10.80.1 X. tropicalis
JGI 4.1 gw1.10.79.1 X. tropicalis
JGI 4.1 gw1.10.78.1 X. tropicalis
JGI 4.1 e_gw1.10.80.1 X. tropicalis
JGI 4.1 e_gw1.10.79.1 X. tropicalis
JGI 4.1 e_gw1.10.78.1 X. tropicalis

mRNAs based on gene models(40)

Source Version Model Species
NCBI 10.1 XBmRNA66105 X. laevis.L
NCBI 10.1 XBmRNA71691 X. laevis.S
ENSEMBL 10.0 ENSXETT00000082376 X. tropicalis
NCBI 10.0 mRNA038481 X. tropicalis
Xenbase 9.2 rna84769 X. laevis.L
ENSEMBL 9.1 ENSXETT00000091018 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082376 X. tropicalis
ENSEMBL 9.1 ENSXETT00000074088 X. tropicalis
ENSEMBL 9.1 ENSXETT00000081907 X. tropicalis
JGI 9.1 Xelaev18038687m X. laevis.L
Xenbase 9.1 rna10848 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087535 X. tropicalis
JGI 9.1 Xelaev18042018m X. laevis.S
ENSEMBL 9.1 ENSXETT00000098681 X. tropicalis
ENSEMBL 9.1 ENSXETT00000100811 X. tropicalis
ENSEMBL 9.1 ENSXETT00000103624 X. tropicalis
ENSEMBL 9.1 ENSXETT00000009778 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071718 X. tropicalis
JGI 8.0 Xetrov14033068m X. tropicalis
JGI 7.2 Xelaev16048054m X. laevis.L
JGI 7.1 Xetro.G00109.3 X. tropicalis
JGI 7.1 Xetro.G00109.5 X. tropicalis
JGI 7.1 Xetro.G00109.6 X. tropicalis
JGI 7.1 Xetro.G00109.7 X. tropicalis
JGI 7.1 Xetro.G00109.4 X. tropicalis
JGI 7.1 Xetro.G00109.1 X. tropicalis
JGI 7.1 Xetro.G00109.2 X. tropicalis
JGI 6.0 XeXenL6RMv10054493m X. laevis.L
JGI 4.1 gw1.10.78.1 X. tropicalis
JGI 4.1 e_gw1.10.79.1 X. tropicalis
JGI 4.1 e_gw1.10.80.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000009778 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_100077 X. tropicalis
JGI 4.1 estExt_Genewise1.C_100078 X. tropicalis
JGI 4.1 estExt_Genewise1.C_100079 X. tropicalis
JGI 4.1 estExt_Genewise1.C_100080 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_10000145 X. tropicalis
JGI 4.1 e_gw1.10.78.1 X. tropicalis
JGI 4.1 gw1.10.79.1 X. tropicalis
JGI 4.1 gw1.10.80.1 X. tropicalis

mRNAs from cDNA libraries (10)

Clone Accession Species Library Anatomy Stage
TGas066a06 CR848206 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas139i04 CT030105 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas020i08 CU075688 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
XM_002931812 X. tropicalis
XM_004915742 X. tropicalis
IMAGE:6323820 BC094402 X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
XM_018229764 X. laevis.L
XM_041572697 X. laevis.L
XR_001932620 X. laevis.L
XM_041574678 X. laevis.S

ESTs (164)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
CAAO9141 CX957253 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7694404 CX922254 5' X. tropicalis NIH_XGC_tropTe4 testis frog
TGas112h04 AL962566 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:6995054 CF239615 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7689624 CX913838 5' X. tropicalis NIH_XGC_tropTe4 testis frog
TNeu023i05 AL641705 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu048d06 AL659740 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu042e11 AL661128 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu041j24 AL662703 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu051g09 AL679701 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu103a22 AL790905 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu087n15 AL805078 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas112h10 AL962568 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas135h09 AL966486 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas116a12 AL967245 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas094c13 AL968178 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7674571 CX884884 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7673957 CX883619 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7673995 CX883557 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7670356 CX877889 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
TGas108k18 AL969860 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA005a15 CR576270 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8857336 EL820576 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
TTpA043m13 BX720932 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
st21n04 DC169331 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTpA044d20 BX725107 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
st33f05 DC172861 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TTpA047e10 BX737327 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
st34f05 DC173131 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
XZT10778 CX310627 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st89b01 DC188709 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7620716 CX341125 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st97n20 DC192199 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7620448 CX341232 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7618948 CX346460 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st98i14 DC192367 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7628406 CX382381 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7613306 CX388895 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT4025 CX399768 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st109f24 DC194240 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
XZT4686 CX400819 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7609173 CX410154 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7668642 CX874648 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
TGas139i04 AL972690 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
CN075187 CN075187 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7577685 CX423436 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7647528 CX806246 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7527824 CX424754 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7657552 CX829623 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7662260 CX844935 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:8886754 EL844229 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7667709 CX854581 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7575324 CX430069 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas122b12 AL973375 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7533047 CX434164 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas001i03 AL594590 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7573301 CX436646 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas001i19 AL594597 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7536852 CX445334 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas020i08 AL632870 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7541686 CX448847 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas043p23 AL654819 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7538973 CX451616 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas056d24 AL678193 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7539457 CX452317 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7569296 CX453260 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas051p08 AL679913 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7543459 CX458854 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas061g05 AL682326 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7561040 CX464140 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas066a06 AL682448 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas057h13 AL682736 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7553785 CX492103 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas128d15 AL959148 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7546463 CX499442 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas127j15 AL961431 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7557300 CX505652 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8934952 EL636309 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:7853201 DT393929 5' X. tropicalis NIH_XGC_tropSkeMus1 skeletal muscle frog
IMAGE:7742717 DN034343 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7737240 DN025032 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
rst109f24 DC163591 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:4462499 BG885602 3' X. tropicalis Wellcome CRC pCS107 tropicalis St10-12 whole organism NF stage 10 to NF stage 12
TGas122b12 AL973374 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas066a06 BX745874 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas057h13 BX746099 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas051p08 BX746487 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas061g05 BX748622 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas094c13 BX752244 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas108k18 BX754006 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas116a12 BX756691 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas128d15 BX758557 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas139i04 BX760091 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas127j15 BX761037 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas055e06 BX761900 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
rst21n04 DC139158 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst33f05 DC142597 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst89b01 DC158603 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst97n20 DC162219 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5