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Summary Expression Phenotypes Gene Literature (12) GO Terms (15) Nucleotides (216) Proteins (104) Interactants (177) Wiki
XB-GENEPAGE-983602

Show:     All X. tropicalis X. laevis

Nucleotide sequences for pcdh1 - All

RefSeq mRNAs(19)
Models - Gene (23)
Models - mRNA (33)
mRNAs (26)
ESTs (69)

RefSeq mRNAs (19)

Accession Version Protein Name Length Protein Species
NM_001102705 NM_001102705.1 protocadherin-1 5481 bp NP_001096175 X. tropicalis
XM_012958411 XM_012958411.3 protocadherin-1 isoform X1 10812 bp XP_012813865 X. tropicalis
XM_012958415 XM_012958415.3 protocadherin-1 isoform X2 10323 bp XP_012813869 X. tropicalis
XM_012958416 XM_012958416.2 protocadherin-1 isoform X2 10062 bp XP_012813870 X. tropicalis
XM_012958417 XM_012958417.3 protocadherin-1 isoform X2 10203 bp XP_012813871 X. tropicalis
XM_012958418 XM_012958418.2 protocadherin-1 isoform X2 9965 bp XP_012813872 X. tropicalis
XM_018091906 XM_018091906.2 protocadherin-1 isoform X3 4341 bp XP_017947395 X. tropicalis
XM_018250560 XM_018250560.2 protocadherin-1 isoform X1 10339 bp XP_018106049 X. laevis.L
XM_018250561 XM_018250561.2 protocadherin-1 isoform X2 10289 bp XP_018106050 X. laevis.L
XM_018250562 XM_018250562.2 protocadherin-1 isoform X2 9916 bp XP_018106051 X. laevis.L
XM_018250564 XM_018250564.2 protocadherin-1 isoform X3 4001 bp XP_018106053 X. laevis.L
XM_018250566 XM_018250566.2 protocadherin-1 isoform X4 3678 bp XP_018106055 X. laevis.L
XM_041586139 XM_041586139.1 XP_041442073.1 protocadherin-1 isoform X2 9869 bp XP_041442073 X. laevis.L
XM_018256221 XM_018256221.2 protocadherin-1 isoform X1 10240 bp XP_018111710 X. laevis.S
XM_018256222 XM_018256222.2 protocadherin-1 isoform X2 10157 bp XP_018111711 X. laevis.S
XM_018256224 XM_018256224.2 protocadherin-1 isoform X2 9864 bp XP_018111713 X. laevis.S
XM_018256225 XM_018256225.2 protocadherin-1 isoform X3 4000 bp XP_018111714 X. laevis.S
XM_041588764 XM_041588764.1 XP_041444698.1 protocadherin-1 isoform X2 9875 bp XP_041444698 X. laevis.S
XM_041588765 XM_041588765.1 XP_041444699.1 protocadherin-1 isoform X4 3681 bp XP_041444699 X. laevis.S

Models - Gene (23)

Source Version Model Species
NCBI 10.1 XBXL10_1g16561 X. laevis.S
NCBI 10.1 XBXL10_1g12166 X. laevis.L
NCBI 10.0 XBXT10g006354 X. tropicalis
ENSEMBL 10.0 pcdh1 X. tropicalis
Xenbase 9.2 gene6964 X. laevis.L
Xenbase 9.2 gene10518 X. laevis.S
JGI 9.1 Xelaev18017099m.g X. laevis.L
JGI 9.1 Xelaev18021541m.g X. laevis.S
Xenbase 9.1 gene25344 X. tropicalis
ENSEMBL 9.1 pcdh1 X. tropicalis
JGI 7.1 Xetro.C01230 X. tropicalis
JGI 6.0 XeXenL6RMv10030065m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000001875 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_650008 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_650030 X. tropicalis
JGI 4.1 estExt_Genewise1.C_650133 X. tropicalis
JGI 4.1 estExt_Genewise1.C_650130 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_65000030 X. tropicalis
JGI 4.1 gw1.65.133.1 X. tropicalis
JGI 4.1 gw1.65.130.1 X. tropicalis
JGI 4.1 e_gw1.65.133.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_650016 X. tropicalis
JGI 4.1 e_gw1.65.130.1 X. tropicalis

mRNAs based on gene models(33)

Source Version Model Species
NCBI 10.1 XBmRNA22763 X. laevis.L
NCBI 10.1 XBmRNA31101 X. laevis.S
NCBI 10.0 mRNA031396 X. tropicalis
ENSEMBL 10.0 ENSXETT00000003963 X. tropicalis
ENSEMBL 10.0 ENSXETT00000085832 X. tropicalis
ENSEMBL 10.0 ENSXETT00000094970 X. tropicalis
Xenbase 9.2 rna20335 X. laevis.L
Xenbase 9.2 rna30557 X. laevis.S
Xenbase 9.1 rna50175 X. tropicalis
JGI 9.1 Xelaev18017099m X. laevis.L
ENSEMBL 9.1 ENSXETT00000003963 X. tropicalis
ENSEMBL 9.1 ENSXETT00000052961 X. tropicalis
ENSEMBL 9.1 ENSXETT00000076412 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094970 X. tropicalis
ENSEMBL 9.1 ENSXETT00000085832 X. tropicalis
JGI 9.1 Xelaev18021541m X. laevis.S
JGI 7.1 Xetro.C01230.1 X. tropicalis
JGI 7.1 Xetro.C01230.3 X. tropicalis
JGI 7.1 Xetro.C01230.4 X. tropicalis
JGI 7.1 Xetro.C01230.2 X. tropicalis
JGI 6.0 XeXenL6RMv10030065m X. laevis.L
JGI 4.1 estExt_Genewise1.C_650133 X. tropicalis
JGI 4.1 e_gw1.65.133.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000003963 X. tropicalis
ENSEMBL 4.1 ENSXETT00000052961 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_650030 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_650008 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_650016 X. tropicalis
JGI 4.1 estExt_Genewise1.C_650130 X. tropicalis
JGI 4.1 e_gw1.65.130.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_65000030 X. tropicalis
JGI 4.1 gw1.65.130.1 X. tropicalis
JGI 4.1 gw1.65.133.1 X. tropicalis

mRNAs from cDNA libraries (26)

Clone Accession Species Library Anatomy Stage
IMAGE:7638855 BC135899 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TEgg092j24 CT027868 X. tropicalis
NM_001102705 X. tropicalis
XM_012958411 X. tropicalis
XM_012958415 X. tropicalis
XM_012958416 X. tropicalis
XM_012958417 X. tropicalis
XM_012958418 X. tropicalis
XM_018091906 X. tropicalis
AB066361 X. laevis.L
AF053469 X. laevis.L
IMAGE:6957295 BC079761 X. laevis.L
NM_001136169 X. laevis.L
XM_018250560 X. laevis.L
XM_018250561 X. laevis.L
XM_018250562 X. laevis.L
XM_018250564 X. laevis.L
XM_018250566 X. laevis.L
XM_041586139 X. laevis.L
JN029748 X. laevis.S
XM_018256221 X. laevis.S
XM_018256222 X. laevis.S
XM_018256224 X. laevis.S
XM_018256225 X. laevis.S
XM_041588764 X. laevis.S
XM_041588765 X. laevis.S

ESTs (69)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas105f02 AL969751 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7715379 CX975092 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7670125 CX876946 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7664041 CX848127 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7659775 CX839352 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7656668 CX828049 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7654243 CX823577 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7652394 CX815509 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7649757 CX809801 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7649459 CX809064 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7647196 CX805235 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7641508 CX795809 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7638855 CX384366 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA044l21 CR586176 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA062a09 CR450093 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TNeu119n02 AL797237 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7559309 CX514309 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7571470 CX512636 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7525193 CX440014 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7529626 CX426612 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas089b14 BX763751 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas073b14 AL784081 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7651850 CX813682 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
TGas105f02 BX756871 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas089b14 BX763752 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7571470 CX512635 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7559309 CX514308 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu119n02 BX698232 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA062a09 CR450094 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7638855 CX384365 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7641508 CX795808 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7647196 CX805234 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7649459 CX809063 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7649757 CX809800 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7652394 CX815508 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7654243 CX823576 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7656668 CX828048 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7659775 CX839351 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7670125 CX876945 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7715379 CX975091 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7649835 DR831677 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:6325762 CA973514 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
XL190c23 BJ619701 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
PBX0027E04 AW634980 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL022l17 BJ033752 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL035n24 BJ042496 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL069e17 BJ062861 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:6325543 CA973361 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
XL155f06 BJ096847 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:5161754 CA791551 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
PBX0073A06 AW638678 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGp998G068241 BX854744 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:5156684 CA790337 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
za41h08 AW158481 5' X. laevis.L Xenopus EST library brain NF stage 45 to NF stage 66
IMAGE:3378461 BE491330 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:5155441 CA789928 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
PBX0023E02 AW634668 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL204d11 BJ623322 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3378147 BE506200 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
XL203d11 BJ623047 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3378461 BE491488 3' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:3378147 BE189045 3' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
XL204d11 BJ639978 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL203d11 BJ639725 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL156h02 BJ628355 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL069e17 BJ080798 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxl277p24 DC082027 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL022l17 BJ049001 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL035n24 BJ056450 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15