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sox2xenopus   

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Experiment details for sox2

Gawantka V et al. (1998) Assay

Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning.

Gene Clone Species Stages Anatomy
sox2.L 19f1-1 laevis NF stage 10.5 to NF stage 29 and 30 brain , spinal cord , eye , central nervous system , neural plate

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  Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 13

Gene Clone Species Stages Anatomy
sox2.L 19f1-1 laevis NF stage 10.5 to NF stage 29 and 30 brain , spinal cord , eye , central nervous system , neural plate

Display additional annotations [+]
  Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 14

Gene Clone Species Stages Anatomy
sox2.L 19f1-1 laevis NF stage 10.5 ectoderm

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  Fig. 4. Gastrula regionalization. Whole-mount in situ hybridizations of gastrula embryos are shown. Expression in ectodermal and mes-endodermal domains is shown in upper and lower panel, respectively.(A,D,K) Dorsal view with animal pole facing up; (B,C,G,L), mid-sagittal sections, dorsal facing right, animal pole facing up; (E,F) animal view, dorsal facing up. (H,I,J) Vegetal view, dorsal facing up. bp, Dorsal blastopore lip; dac, dorsal animal cap; dNIMZ, dorsal non-involuting marginal zone; eac, epithelial layer of animal cap; sac, sensorial layer of animal cap; vac, ventral animal cap.