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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
cdx4	xenopus		whole organism [+] anatomical group,cell,embryonic structure,acellular anatomical structure,anatomical region,anatomical space,extraembryonic structure,process,cell condensation,cell part,multicellular anatomical structure

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Expression summary for cdx4

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Experiment	Species	Images	Stages	Anatomy	Assay
XDB3 XDB3	laevis	2 images	NF stage 10.5 to NF stage 20	marginal zone, mesoderm, nervous system, posterior neural tube	in situ hybridization
Harland lab in situ screen Assay Harland lab in situ screen	tropicalis	1 image	NF stage 29 and 30	brain, eye, head, otic vesicle, pharyngeal arch, [+] posterior neural tube, tail tip	in situ hybridization
Shiotsugu J et al. (2004) Assay Paper	laevis	4 images	NF stage 11 to NF stage 26	marginal zone, neural tube, non-neural ectoderm, posterior neural tube, tail bud	in situ hybridization
Delaune E et al. (2005) Assay Paper	laevis	1 image	NF stage 11 to NF stage 12	mesoderm	in situ hybridization
Keenan ID et al. (2006) Assay Paper	laevis	2 images	NF stage 11	circumblastoporal collar, dorsal marginal zone, marginal zone	in situ hybridization
Reece-Hoyes JS et al. (2002) Assay Paper	tropicalis	1 image	NF stage 10 to NF stage 33 and 34	circumblastoporal collar, dorso-lateral marginal zone, involuted dorsal mesoderm, involuted ventral mesoderm, marginal zone, [+] posterior neural tube, posterior wall of neurenteric canal, tail bud, tail region, ventral marginal zone, ventro-lateral marginal zone	in situ hybridization
Rodríguez-Seguel E et al. (2009) Assay Paper	tropicalis	1 image	NF stage 14	neural plate	in situ hybridization
Paper	laevis	1 image	NF stage 17	chordal neural plate	in situ hybridization
Retinoid signalling is required for information transfer from mesoderm to neuroectoderm during gastrulation. Paper	laevis	1 image	NF stage 20	neural tube, neuroectoderm	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 17	chordal neural plate, neural tube, neuroectoderm	in situ hybridization
Interaction between X-Delta-2 and Hox genes regulates segmentation and patterning of the anteroposterior axis. Paper	laevis	1 image	NF stage 20	posterior neural tube	in situ hybridization
Chen JA et al. (2005) Assay Paper	tropicalis	1 image	NF stage 11 to NF stage 29 and 30	chordal neural plate, marginal zone, roof plate, spinal cord, tail bud	in situ hybridization
Analysis of the developing Xenopus tail bud reveals separate phases of gene expression during determination and outgrowth. Paper	laevis	1 image	NF stage 14 to NF stage 29 and 30	circumblastoporal collar, mesenchyme, post-anal gut, posterior neural tube, posterior wall of neurenteric canal, [+] roof plate, spinal cord, tail tip	in situ hybridization
Beck CW and Slack JM (1998) Assay Paper	laevis	4 images	NF stage 13 to NF stage 29 and 30	mesenchyme, mesoderm, neural plate, neural tube, notochord, [+] post-anal gut, posterior neural tube, posterior wall of neurenteric canal, roof plate, somite, spinal cord, tail tip	in situ hybridization
Lhx1 is required for specification of the renal progenitor cell field. Paper	laevis	1 image	NF stage 32	early proximal tubule, head region, late proximal tubule, otic vesicle	in situ hybridization
Conserved roles for Oct4 homologues in maintaining multipotency during early vertebrate development. Paper	laevis	1 image	NF stage 28	posterior neural tube	in situ hybridization
Polycomb and bmi-1 homologs are expressed in overlapping patterns in Xenopus embryos and are able to interact with each other. Paper	laevis	1 image	NF stage 9 to NF stage 28	brain, branchial arch, forebrain, hindbrain, hyoid arch, [+] mandibular arch, midbrain, neural plate, neuroectoderm, otic vesicle, pharyngeal arch, presumptive ectoderm, somite, spinal cord	in situ hybridization
An essential role for LPA signalling in telencephalon development. Paper	laevis	1 image	NF stage 15 to NF stage 17	anterior neural fold, neural fold	in situ hybridization
Dingwell KS and Smith JC (2006) Assay Paper	laevis	1 image	NF stage 20 to NF stage 28	neural tube, posterior neural tube, tail tip	in situ hybridization
Acosta H et al. (2015) Assay Paper	laevis	1 image	NF stage 18	chordal neural plate, circumblastoporal collar	in situ hybridization
Northrop JL and Kimelman D (1994) Assay Paper	laevis	4 images	NF stage 9 to NF stage 22	animal hemisphere, chordal neural plate, circumblastoporal collar, involuted ventral mesoderm, marginal zone, [+] mesoderm, neural plate, posterior neural tube	in situ hybridization
BMP-4 regulates the dorsal-ventral differences in FGF/MAPKK-mediated mesoderm induction in Xenopus. Paper	laevis	1 image	NF stage 12	marginal zone	in situ hybridization
BMP-4 regulates the dorsal-ventral differences in FGF/MAPKK-mediated mesoderm induction in Xenopus. Paper	laevis	1 image	NF stage 12	mesoderm	in situ hybridization
BMP-4 regulates the dorsal-ventral differences in FGF/MAPKK-mediated mesoderm induction in Xenopus. Paper	laevis	1 image	NF stage 12	marginal zone	in situ hybridization
BMP-4 regulates the dorsal-ventral differences in FGF/MAPKK-mediated mesoderm induction in Xenopus. Paper	laevis	1 image	NF stage 12	marginal zone	in situ hybridization
BMP-4 regulates the dorsal-ventral differences in FGF/MAPKK-mediated mesoderm induction in Xenopus. Paper	laevis	1 image	NF stage 12	marginal zone	in situ hybridization
Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β‑catenin recruitment. Paper	laevis	1 image	NF stage 10 to NF stage 10.5	marginal zone	in situ hybridization
A consensus Oct1 binding site is required for the activity of the Xenopus Cdx4 promoter. Paper	laevis	1 image	NF stage 11 to NF stage 29 and 30	circumblastoporal collar, ectoderm, endoderm, marginal zone, mesoderm, [+] neural fold, posterior neural tube, tail bud, ventro-lateral marginal zone	in situ hybridization
Modeling Bainbridge-Ropers Syndrome in Xenopus laevis Embryos. Paper	laevis	1 image	NF stage 18	posterior neural tube	in situ hybridization
Pinhead signaling regulates mesoderm heterogeneity via FGF receptor-dependent pathway. Paper	laevis	1 image	NF stage 12	marginal zone, mesoderm	in situ hybridization
Patel JH et al. (2022) Assay Paper	tropicalis	1 image	NF stage 45	regenerating tail	in situ hybridization
Ossipova O et al. (2020) Assay Paper	laevis	1 image	NF stage 11 to NF stage 12	marginal zone	in situ hybridization
XGC-gastrula Unigene tropicalis cDNA library	tropicalis		NF stage 10.5 to NF stage 12	whole organism	cDNA Library
XGC-neurula Unigene tropicalis cDNA library	tropicalis		NF stage 13 to NF stage 21	whole organism	cDNA Library
NICHD_XGC_Emb5 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10 to NF stage 13	whole organism	cDNA Library
XtSt10-30 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10 to NF stage 29 and 30	whole organism	cDNA Library
NIH_XGC_tropGas7 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10.5 to NF stage 12.5	whole organism	cDNA Library
NIH_XGC_tropGas6 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10 to NF stage 13	whole organism	cDNA Library
Xenopus tropicalis embryo gastrula Unigene tropicalis cDNA library	tropicalis		NF stage 10 to NF stage 12.5	whole organism	cDNA Library
NICHD_XGC_Emb3 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 24 to NF stage 25	whole organism	cDNA Library
Wellcome CRC pRN3 St13 17 egg animal cap Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 13 to NF stage 21	whole organism	cDNA Library
NICHD_XGC_Emb2 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 17 to NF stage 19	whole organism	cDNA Library
NIBB Mochii normalized Xenopus neurula library Unigene laevis cDNA library	laevis		NF stage 15	whole organism	cDNA Library
NIBB Mochii normalized Xenopus tailbud library Unigene laevis cDNA library	laevis		NF stage 25	whole organism	cDNA Library
NIBB Mochii normalized Xenopus early gastrula library Unigene laevis cDNA library	laevis		NF stage 10.5	whole organism	cDNA Library
Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library Unigene laevis cDNA library	laevis		NF stage 12.5	ectoderm	cDNA Library
Blumberg_Cho dorsal blastopore lip Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 7 to NF stage 9	upper blastopore lip	cDNA Library
NICHD_XGC_Emb9 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 17 to NF stage 19	whole organism	cDNA Library

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