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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
foxj1	xenopus		whole organism [+] anatomical group,cell,embryonic structure,acellular anatomical structure,anatomical region,anatomical space,extraembryonic structure,process,cell condensation,cell part,multicellular anatomical structure

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Expression summary for foxj1

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Experiment	Species	Images	Stages	Anatomy	Assay
Tran U et al. (2007) Assay Paper	laevis	1 image	NF stage 35 and 36	ciliated epidermal cell, epidermis, pronephric nephrostome	in situ hybridization
Serotonin signaling is required for Wnt-dependent GRP specification and leftward flow in Xenopus. Paper	laevis	3 images	NF stage 9 to NF stage 11.5	dorsal marginal zone, involuted dorsal mesoderm	in situ hybridization
Tran U et al. (2007) Assay Paper	laevis	1 image	NF stage 35 and 36	ciliated epidermal cell, mouth primordium, pronephric nephrostome	in situ hybridization
Left-right asymmetry: lessons from Cancún. Paper	laevis	1 image	NF stage 10.25 to NF stage 10.5	dorso-lateral marginal zone, mesoderm	in situ hybridization
Symmetry breakage in the frog Xenopus: Role of Rab11 and the ventral-right blastomere. Paper	laevis	2 images	NF stage 9 to NF stage 13	dorsal marginal zone, neuroectoderm, upper blastopore lip	in situ hybridization
Wnt11b is involved in cilia-mediated symmetry breakage during Xenopus left-right development. Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone, mesoderm	in situ hybridization
Song R et al. (2014) Assay Paper	laevis	2 images	NF stage 21 to NF stage 32	brain, ciliated epidermal cell, epidermis, floor plate, gastrocoel roof plate, [+] neural tube, proctodeum, pronephric nephrostome, spinal cord, tail tip	in situ hybridization
Multicilin promotes centriole assembly and ciliogenesis during multiciliate cell differentiation. Paper	laevis	1 image	NF stage 26	ciliated epidermal cell	in situ hybridization
Tözser J et al. (2015) Assay Paper	laevis	1 image	NF stage 17	ciliated epidermal cell	in situ hybridization
Walentek P et al. (2015) Assay Paper	laevis	5 images	NF stage 15 to NF stage 45	alimentary system, ciliated epidermal cell, epidermis, esophagus, hypobranchial placode, [+] intestine, multiciliated cell, non-neural ectoderm, olfactory bulb, pronephric nephrostome, small intestine, stomach	in situ hybridization
Walentek P et al. (2012) Assay Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone	in situ hybridization
Walentek P et al. (2014) Assay Paper	laevis	1 image	NF stage 16	epidermis, neural tube	in situ hybridization
Left-right asymmetry: lessons from Cancún. Martin Blum	laevis	1 image	NF stage 10.5	dorso-lateral marginal zone, mesoderm	in situ hybridization
Pohl BS and Knöchel W (2005) Assay Paper	laevis	1 image	NF stage 11 to NF stage 35 and 36	animal cap, dorsal marginal zone, multiciliated epidermal cell, neural groove	in situ hybridization
Weidemann M et al. (2016) Assay Paper	laevis	1 image	NF stage 20	ciliated cell	in situ hybridization
Leftward Flow Determines Laterality in Conjoined Twins. Paper	laevis	1 image	NF stage 10.5 to NF stage 11	dorso-lateral marginal zone, mesoderm	in situ hybridization
Cibois M et al. (2015) Assay Paper	laevis	2 images	NF stage 11 to NF stage 14	ectoderm, epidermis, multiciliated cell	immunohistochemistry
Cibois M et al. (2015) Assay Paper	laevis	1 image	NF stage 11 to NF stage 14	epidermis, multiciliated cell	in situ hybridization
RAPGEF5 Regulates Nuclear Translocation of β-Catenin. Paper	tropicalis	2 images	NF stage 10	dorsal marginal zone	in situ hybridization
RAPGEF5 Regulates Nuclear Translocation of β-Catenin. Paper	laevis	2 images	NF stage 10	dorsal marginal zone	in situ hybridization
Del Viso F et al. (2016) Assay Paper	tropicalis	1 image	NF stage 10.5 to NF stage 29 and 30	ciliated epidermal cell, dorsal marginal zone, epidermis, head region	in situ hybridization
ATP4 and ciliation in the neuroectoderm and endoderm of Xenopus embryos and tadpoles. Paper	laevis	1 image	NF stage 16	floor plate	in situ hybridization
ATP4 and ciliation in the neuroectoderm and endoderm of Xenopus embryos and tadpoles. Paper	laevis	1 image	NF stage 19	floor plate	in situ hybridization
Isolation and developmental expression of Xenopus FoxJ1 and FoxK1. Paper	laevis	1 image	NF stage 12 to NF stage 35 and 36	ciliated epidermal cell, floor plate, forebrain, neural plate, otic vesicle, [+] pharyngeal region, pronephric mesenchyme, upper blastopore lip	in situ hybridization
A Conserved Role of the Unconventional Myosin 1d in Laterality Determination. Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone, mesoderm	in situ hybridization
WDR5 Stabilizes Actin Architecture to Promote Multiciliated Cell Formation. Paper	tropicalis	1 image	NF stage 27 to NF stage 29 and 30	multiciliated epidermal cell, proctodeum, pronephric kidney, spinal cord	in situ hybridization
Kulkarni SS and Khokha MK (2018) Assay Paper	tropicalis	1 image	NF stage 10 to NF stage 11	dorso-lateral marginal zone	in situ hybridization
miR-34/449 miRNAs are required for motile ciliogenesis by repressing cp110. Paper	laevis	1 image	NF stage 21 to NF stage 32	anterior neural tube, brain, ciliated epidermal cell, proctodeum, pronephric nephrostome, [+] tail tip	in situ hybridization
An Early Function of Polycystin-2 for Left-Right Organizer Induction in Xenopus. Paper	laevis	1 image	NF stage 11	upper blastopore lip	in situ hybridization
Candidate Heterotaxy Gene FGFR4 Is Essential for Patterning of the Left-Right Organizer in Xenopus. Paper	tropicalis	1 image	NF stage 10 to NF stage 12	mesoderm, upper blastopore lip	in situ hybridization
Kulkarni SS and Khokha MK (2018) Assay Paper	tropicalis	1 image	NF stage 16	gastrocoel roof plate, left-right organizer primordium	in situ hybridization
Vick P et al. (2018) Assay Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone, mesoderm	in situ hybridization
Rachev E et al. (2020) Assay Paper	laevis	4 images	NF stage 10 to NF stage 45	brain, branchial basket, dorsal marginal zone, filter chamber, floor plate, [+] hindbrain, mesoderm, midbrain, multiciliated epidermal cell, neural tube, posterior neural tube, proctodeum, pronephric nephrostome, spinal cord, stomach, subcommissural organ, zona limitans intrathalamica	in situ hybridization
Nucleoporin NUP205 plays a critical role in cilia and congenital disease. Paper	tropicalis	1 image	NF stage 28	cement gland, cilium, multiciliated epidermal cell, notochord	in situ hybridization
Walentek P (2021) Assay Paper	laevis	1 image	NF stage 45	foregut epithelium, multiciliated cell, stomach	in situ hybridization
Beckers A et al. (2020) Assay Paper	laevis	1 image	NF stage 10 to NF stage 45	dorsal marginal zone, floor plate, mesoderm, multiciliated epidermal cell, pronephric nephrostome, [+] stomach, subcommissural organ, zona limitans intrathalamica	in situ hybridization
Sempou E et al. (2022) Assay Paper	tropicalis	2 images	NF stage 10	dorsal marginal zone, mesoderm	in situ hybridization
FGF-mediated establishment of left-right asymmetry requires Rab7 function in the dorsal mesoderm in Xenopus. Paper	laevis	1 image	NF stage 10	dorsal marginal zone, mesoderm	in situ hybridization
Rab7 is required for mesoderm patterning and gastrulation in Xenopus. Paper	laevis	1 image	NF stage 10	dorsal marginal zone	in situ hybridization
XGC-gastrula Unigene tropicalis cDNA library	tropicalis		NF stage 10.5 to NF stage 12	whole organism	cDNA Library
XGC-neurula Unigene tropicalis cDNA library	tropicalis		NF stage 13 to NF stage 21	whole organism	cDNA Library
NICHD_XGC_Emb7 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 20 to NF stage 27	whole organism	cDNA Library
Xenopus tropicalis xthr plasmid library Unigene tropicalis cDNA library	tropicalis		NF stage 25 to NF stage 35 and 36	head	cDNA Library
XGC-tailbud Unigene tropicalis cDNA library	tropicalis		NF stage 28 to NF stage 29 and 30	whole organism	cDNA Library
NIH_XGC_tropTad5 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 35 and 36 to NF stage 41	whole organism	cDNA Library
NIH_XGC_tropGas7 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10.5 to NF stage 12.5	whole organism	cDNA Library
NICHD_XGC_Emb1 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 10	whole organism	cDNA Library
NICHD_XGC_Emb4 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 31 to NF stage 32	whole organism	cDNA Library
NIBB Mochii normalized Xenopus neurula library Unigene laevis cDNA library	laevis		NF stage 15	whole organism	cDNA Library
NIBB Mochii normalized Xenopus early gastrula library Unigene laevis cDNA library	laevis		NF stage 10.5	whole organism	cDNA Library

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